AnnotationForge
Bioc currentTools for building SQLite-based annotation data packages
Release Lineage
Entered 2.11 · Oct 3, 2012
Current · Requires R 4.6
Description
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
265 14 exported
Complexity
3.1 avg / 23 max
Call network
265 nodes / 1056 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
13,553
Files
418
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
189
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
2.8%
Unsafe pattern score
13
Dep constraint coverage
30%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
28
First release
2012-11-28
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 13
- Examples that run
- 46%6 run in a plain check (3 of them under a condition) · 5 never run · 2 hold no code
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 58%
- Help pages citing references
- 0%
Repository practices
Checks run against github.com/bioconductor/annotationforge on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| ANNDBPKG-INDEX | – | – | – |
| GO_finch | data.frame | 3,195 × 3 | No other package |
| finch_info | data.frame | 499 × 14 | No other package |
| results | vector | 1,000 elements | No other package |
| unigene | – | – | – |
Topics
Depended on by (4)
Bioconductor (4)
Suggested by (2)
People
- Bioconductor Package Maintainer maintainer
-
Madelyn Carlson
contributor
'Creating probe packages' vignette translation from Sweave to Rmarkdown / HTML
- Marc Carlson author
- Hervé Pagès author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("AnnotationForge")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.