Hervé Pagès

1 package On CRAN since Apr 2024 (2 years) · last active 1 year ago On Bioconductor since May 2004 (22 years) · last active 6 months ago

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Downloads

291

Last 30 days

757

Last 90 days

5.5K

Last year

Average trend: -11.8% (30d vs prior 30d)

Top Packages by Downloads

Rtwobitlib

291

Portfolio Check Status

Aggregate CRAN check results across 1 maintained package.

Recent Activity

Rtwobitlib updated v0.3.10 May 5, 2025

'2bit' 'C' Library

Rtwobitlib updated v0.3.9 Mar 19, 2025

'2bit' 'C' Library

Rtwobitlib updated v0.3.8 Mar 17, 2025

'2bit' 'C' Library

Rtwobitlib updated v0.3.6 Apr 23, 2024

'2bit' 'C' Library

Rtwobitlib new v0.3.5 Apr 21, 2024

'2bit' 'C' Library

Maintained Packages

1 package

Package	Title	Downloads	Version
Rtwobitlib 291 downloads/30d	'2bit' 'C' Library	291	0.3.10

Bioconductor Packages

53 packages

Package	Title	Category	Version
AnnotationDbi Bioc	Manipulation of SQLite-based annotations in Bioconductor	software	1.74.0
AnnotationForge Bioc	Tools for building SQLite-based annotation data packages	software	1.54.0
BSgenome Bioc	Software infrastructure for efficient representation of full genomes and their SNPs	software	1.80.0
BSgenomeForge Bioc	Forge your own BSgenome data package	software	1.12.0
Bioc.gff Bioc	Read and write GFF and GTF files	software	1.2.0
BiocBaseUtils Bioc	Utility and internal functions for Bioconductor packages	software	1.14.2
BiocDeveloper Bioc removed	General utility functions for developing Bioconductor packages		0.99.9
BiocGenerics Bioc	S4 generic functions used in Bioconductor	software	0.58.1
BiocUtils Bioc removed	General utility functions for Bioconductor packages		0.99.4
Biostrings Bioc	Efficient manipulation of biological strings	software	2.80.2
ChIPpeakAnno Bioc	Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data	software	3.46.1
ChIPseeker Bioc	ChIPseeker for ChIP peak Annotation, Comparison, and Visualization	software	1.48.0
DelayedArray Bioc	A unified framework for working transparently with on-disk and in-memory array-like datasets	software	0.38.2
DelayedDataFrame Bioc	Delayed operation on DataFrame using standard DataFrame metaphor	software	1.28.0
DelayedMatrixStats Bioc	Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects	software	1.34.0
GDSArray Bioc	Representing GDS files as array-like objects	software	1.32.0
GUIDEseq Bioc	GUIDE-seq and PEtag-seq analysis pipeline	software	1.42.0
GenomeInfoDb Bioc	Utilities for manipulating chromosome names, including modifying them to follow a particular naming style	software	1.48.0
GenomicAlignments Bioc	Representation and manipulation of short genomic alignments	software	1.48.0
GenomicRanges Bioc	Representation and manipulation of genomic intervals	software	1.64.0
GenomicTuples Bioc	Representation and Manipulation of Genomic Tuples	software	1.46.0
HDF5Array Bioc	HDF5 datasets as array-like objects in R	software	1.40.0
IRanges Bioc	Foundation of integer range manipulation in Bioconductor	software	2.46.0
KEGGgraph Bioc	KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor	software	1.72.0
MatrixGenerics Bioc	S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects	software	1.24.0
MultiAssayExperiment Bioc	Software for the integration of multi-omics experiments in Bioconductor	software	1.38.0
MultipleAlignment Bioc removed	Representation of multiple sequence alignments in Bioconductor		0.99.4
NADfinder Bioc	Call wide peaks for sequencing data	software	1.36.0
RNAseqData.HNRNPC.bam.chr14 Bioc	Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells	experiment	0.50.0
Rhtslib Bioc	HTSlib high-throughput sequencing library as an R package	software	3.8.0
Rsamtools Bioc	Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import	software	2.28.0
S4Arrays Bioc	Foundation of array-like containers in Bioconductor	software	1.12.1
S4Vectors Bioc	Foundation of vector-like and list-like containers in Bioconductor	software	0.50.3
Seqinfo Bioc	A simple S4 class for storing basic information about a collection of genomic sequences	software	1.2.0
SparseArray Bioc	High-performance sparse data representation and manipulation in R	software	1.12.3
SummarizedExperiment Bioc	A container (S4 class) for matrix-like assays	software	1.42.0
UCSC.utils Bioc	Low-level utilities to retrieve data from the UCSC Genome Browser	software	1.8.0
VariantExperiment Bioc	A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend	software	1.26.0
XVector Bioc	Foundation of external vector representation and manipulation in Bioconductor	software	0.52.0
ZarrArray Bioc	Bring Zarr datasets in R as DelayedArray objects	software	1.0.1
annotation Bioc	Genomic Annotation Resources	workflows	1.36.0
beachmat Bioc	Compiling Bioconductor to Handle Each Matrix Type	software	2.28.0
bsseq Bioc	Analyze, manage and store whole-genome methylation data	software	1.48.0
cigarillo Bioc	Efficient manipulation of CIGAR strings	software	1.2.1
easylift Bioc	An R package to perform genomic liftover	software	1.10.0
epiSeeker Bioc	epiSeeker: an R package for Annotation, Comparison and Visualization of multi-omics epigenetic data	software	1.0.0
h5mread Bioc	A fast HDF5 reader	software	1.4.1
igblastr Bioc	User-friendly R Wrapper to IgBLAST	software	1.2.23
mia Bioc	Microbiome analysis	software	1.20.0
multicrispr Bioc	Multi-locus multi-purpose Crispr/Cas design	software	1.22.0
pasillaBamSubset Bioc	Subset of BAM files from "Pasilla" experiment	experiment	0.50.0
pwalign Bioc	Perform pairwise sequence alignments	software	1.8.0
updateObject Bioc	Find/fix old serialized S4 instances	software	1.16.0

Package repositories

Repositories of packages Hervé Pagès maintains where an AI coding tool was found. Other people commit to these repositories too, so each line describes the repository, not Hervé Pagès's own work.

Bioconductor/S4Vectors ↗(organization: Bioconductor)
Packages: S4Vectors
- Claude Codefirst seen 2026-09-15
  Commits: at least 1 crediting it in the message
- Claude Code
  Pull requests: 1 from outside contributors, first on 2026-09-14, 1 from forks

Finding nothing does not mean no tool was used. How this is detected.