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BSgenome

Bioc current

Software infrastructure for efficient representation of full genomes and their SNPs

v1.80.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 1.9 · Oct 4, 2006

Current · Requires R 4.6

1.0 In 40 of 49 releases 3.23

Description

Infrastructure shared by all the Biostrings-based genome data packages.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Genetics
Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software › BiologicalQuestion › SequenceMatching
Software › WorkflowStep › Annotation
Software › AssayDomain › SNP

Depended on by (308)

Bioconductor (300)

AllelicImbalance appreci8R ATACseqQC atSNP bambu BEAT Biostrings biovizBase BSgenomeForge bsseq BUSpaRse CAGEr ChIPanalyser ChIPpeakAnno chipseq chromVAR circRNAprofiler cleanUpdTSeq CleanUpRNAseq cliProfiler crisprBowtie crisprBwa crisprDesign CRISPRseek crisprShiny crisprViz DegCre DiffBind diffHic DMRcaller +270 more

CRAN (8)

ActiveDriverWGS GencoDymo2 TmCalculator revert Signac gkmSVM polyRAD sigminer

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