methylumi

Bioc current

Handle Illumina methylation data

v2.58.0 · software · GPL-2

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Release Lineage

Entered 2.5 · Oct 28, 2009

Current · Requires R 4.6

1.0 In 34 of 49 releases 3.23

Description

This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An "intelligent" import function, methylumiR can read the Illumina text files and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.

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Topics

Software › AssayDomain › DNAMethylation

Software › Technology › Microarray › TwoChannel

Software › WorkflowStep › Preprocessing

Software › WorkflowStep › QualityControl

Software › AssayDomain › CpGIsland

Depended on by (8)

Bioconductor (8)

bigmelon ffpe lumi missMethyl RnBeads skewr wateRmelon methyAnalysis

People

Sean Davis

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