R Observatory: Metrics for EpiSemble version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

EpiSemble

0.1.1

Ensemble Based Machine Learning Approach for Predicting Methylation States

0packages depend

2.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dipro SinhaFirst published 2022-08-222 releasesCRAN page ↗

DNA methylation (6mA) is a major epigenetic process by which alteration in gene expression took place without changing the DNA sequence. Predicting these sites in-vitro is laborious, time consuming as well as costly. This 'EpiSemble' package is an in-silico pipeline for predicting DNA sequences containing the 6mA sites. It uses an ensemble-based machine learning approach by combining Support Vector Machine (SVM), Random Forest (RF) and Gradient Boosting approach to predict the sequences with 6mA sites in it. This package has been developed by using the concept of Chen et al. (2019) doi:10.1093/bioinformatics/btz015.

Install

R (CRAN)Ubuntu (r2u)

install.packages("EpiSemble", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-episemble

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 6.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

19

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

2.4K

CRAN downloads in the past year

Rank #15,514 · ~7/day · ~199/mo

Releases R versions

Daily download trend is not available in this view yet.

19830 days

67590 days

2.4K1 year

Compare downloads with other packages →

Also on103 r2u

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (19)

statsdevtools tidyverse seqinr Biostrings splitstackshape entropy party stringr tibble doParallelparallele1071 caret randomForest gbm foreach ftrCOOL iterators

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Dipro Sinha

Author, Maintainer

Authors (5)

Dipro Sinha

Author, Maintainer

Sunil Archak

Author

Tanwy Dasmandal

Author

Dwijesh Chandra Mishra

Author

Md Yeasin

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.1Latest
2023-06-04 · current release · diff ↗
unarchivedReturned to CRAN
2023-06-04
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-04-07
issues were not corrected in time
0.1.0
2022-08-22
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-08-22
Total releases: 2 / 4 yrs
License: GPL-3 OSI
Download size: 1.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("EpiSemble")

Format

Sinha, D., Archak, S., Dasmandal, T., Mishra, D. C., & Yeasin, M. (2023). EpiSemble: Ensemble Based Machine Learning Approach for Predicting Methylation States (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.EpiSemble

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for EpiSemble version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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