R Observatory: Metrics for DNAmotif version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DNAmotif

0.1.1Package record

DNA Sequence Motifs

0packages depend

2.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Subham GhoshCRAN page ↗

Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.

Install

R (CRAN)Ubuntu (r2u)

install.packages("DNAmotif", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dnamotif

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.6 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

How these are measured

Downloads

2.2K

CRAN downloads in the past year

Rank #21,637 · ~6/day · ~182/mo

Releases R versions

Daily download trend is not available in this view yet.

19930 days

61990 days

2.2K1 year

Compare downloads with other packages →

Also on353 r2u

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing DNAmotif adds 1 package (1 with compiled code, 1.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB. 1 more not on CRAN is not measured.

Depends (0)

none

Imports (3)

statsBiostrings Rcpp

LinkingTo (1)

Rcpp

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (7)

Subham Ghosh

Author, Maintainer since 0.1.0 (2024)

Sarika

Author · added in 0.1.1

UB Angadi

Author

Saikath Das

Author

Mir Asif Iquebal

Author · added in 0.1.1

Dipro Sinha

Author

Md Yeasin

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
record
2024-09-27 · current release · diff ↗
0.1.0
record
2024-06-04
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-06-04
Total releases: 2 / 2 yrs
License: GPL-3 OSI
Download size: 24 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DNAmotif")

Format

Ghosh, S., Sarika, Angadi, U., Das, S., Iquebal, M. A., Sinha, D., & Yeasin, M. (2024). DNAmotif: DNA Sequence Motifs (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.DNAmotif

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DNAmotif version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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