longreadvqs
Viral Quasispecies Comparison from Long-Read Sequencing Data
v0.1.5
·
Apr 28, 2026
·
GPL-3
Description
Performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2026) <doi:10.1371/journal.pcbi.1014208>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
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ERROR
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Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-oldrel-macos-arm64
package dependencies
Package required but not available: ‘QSutils’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 29, 2026
ERROR
r-oldrel-macos-arm64
package dependencies
Package required but not available: ‘QSutils’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-oldrel-macos-x86_64
package dependencies
Packages required but not available: 'pwalign', 'QSutils' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.