Cytometry9
Cytometry9 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
100,000 × 11
Missing
0
Format
rda · xz
version 3 · 1.4 MB
File
data/Cytometry9.RData
Fingerprint
73bd5583
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger5,3680-1185 – 10131mean 2519
Min.
-1185
1st Qu.
2146
Median
2406
Mean
2518.61
3rd Qu.
2682
Max.
10131
Std. dev
751.521
Skewness
2.507
Kurtosis
9.765
Outliers
8,0521462 low · 6590 high
CD38:APC H7-A LOGICALinteger5,4360-654 – 11392mean 3034
Min.
-654
1st Qu.
2590
Median
2892
Mean
3034.3
3rd Qu.
3288
Max.
11392
Std. dev
776.007
Skewness
1.343
Kurtosis
4.465
Outliers
8,2941290 low · 7004 high
CD3:APC-A LOGICALinteger6,8170-1303 – 9713mean 3698
Min.
-1303
1st Qu.
2835
Median
3276
Mean
3698.12
3rd Qu.
3831
Max.
9713
Std. dev
1533.85
Skewness
1.178
Kurtosis
0.5545
Outliers
17,9881594 low · 16394 high
CD4+CD20:PB-A LOGICALinteger6,6990-2735 – 11813mean 3608
Min.
-2735
1st Qu.
3200
Median
3552
Mean
3607.89
3rd Qu.
3940
Max.
11813
Std. dev
1082.24
Skewness
0.2192
Kurtosis
1.671
Zeros
1
Outliers
18,7378358 low · 10379 high
CD45:PO-A LOGICALinteger4,1740-592 – 9099mean 4424
Min.
-592
1st Qu.
4017
Median
4231
Mean
4424.35
3rd Qu.
4981
Max.
9099
Std. dev
664.434
Skewness
-0.0533
Kurtosis
1.789
Outliers
1,1851098 low · 87 high
CD56+IgK:PE-A LOGICALinteger6,8100-2587 – 11531mean 2710
Min.
-2587
1st Qu.
2056
Median
2448
Mean
2710.27
3rd Qu.
2972.25
Max.
11531
Std. dev
1121.75
Skewness
1.364
Kurtosis
2.559
Outliers
11,880887 low · 10993 high
CD5:PerCP Cy5-5-A LOGICALinteger6,1020-1533 – 10178mean 2847
Min.
-1533
1st Qu.
2160
Median
2400
Mean
2846.94
3rd Qu.
2782
Max.
10178
Std. dev
1224.4
Skewness
1.569
Kurtosis
1.449
Zeros
1
Outliers
18,800886 low · 17914 high
CD8+IgL:FITC-A LOGICALinteger6,1690-1296 – 11203mean 3842
Min.
-1296
1st Qu.
3487
Median
3758
Mean
3842.3
3rd Qu.
4064
Max.
11203
Std. dev
916.691
Skewness
0.8156
Kurtosis
3.256
Outliers
16,2057125 low · 9080 high
FSC-A LINEARinteger6,7670-3065 – 12637mean 3628
Min.
-3065
1st Qu.
2403
Median
4050
Mean
3627.98
3rd Qu.
4531
Max.
12637
Std. dev
1301.58
Skewness
-0.4463
Kurtosis
0.1823
Outliers
32242 low · 280 high
SSC-A Exp-SSC Lowinteger7,4720-3129 – 14490mean 3946
Min.
-3129
1st Qu.
2470.75
Median
4599
Mean
3946.22
3rd Qu.
5110
Max.
14490
Std. dev
1701.79
Skewness
-0.5869
Kurtosis
-0.7031
Outliers
348 low · 26 high
Population ID (name)factor300Neutrophils63,323CD4+CD8-6,072Monocytes4,982CD8+CD4-4,243CD56dim3,643other type of Debris2,291+24 more
Neutrophils63,323CD4+CD8-6,072Monocytes4,982CD8+CD4-4,243CD56dim3,643other type of Debris2,291+24 more
Levels
30
Used
30
Rows per level
Neutrophils63,323CD4+CD8-6,072Monocytes4,982CD8+CD4-4,243CD56dim3,643other type of Debris2,291TCRgd+1,946doublets neutrophils1,843debris RBC1,819Eosinophils1,683debris T cells1,638debris neutrophils1,228Mature SIg Kappa966doublets T cells773Mature SIg Lambda678debris B cells548debris monocytes548TCRgd-355CD4+CD8dim287other type of Doublets260doublets eosinophils197doublets monocytes196debris axis176debris NK cells125CD56bright115Other nucleated cells38CD4+CD8+13debris eosinophils10doublets B cells2PLASMA CELLS2
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.22 | 2025-10-29 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.21 | 2025-04-15 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.20 | 2024-10-29 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.19 | 2024-04-30 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.18 | 2023-10-24 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.17 | 2023-04-25 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.16 | 2022-11-01 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.15 | 2022-04-26 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.14 | 2021-10-26 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.13 | 2021-05-19 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.12 | 2020-10-27 | 100,000 × 11 | Unchanged | rda · xz version 3 · 1.4 MB | exact |
| 3.11 | 2020-04-27 | 100,000 × 11 | – | rda · xz version 3 · 1.4 MB | exact |