Cytometry4
Cytometry4 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
49,999 × 11
Missing
0
Format
rda · bzip2
version 3 · 731 KB
File
data/Cytometry4.RData
Fingerprint
3e1464ad
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,6810-1072 – 10996mean 2763
Min.
-1072
1st Qu.
2290
Median
2644
Mean
2763.49
3rd Qu.
2985
Max.
10996
Std. dev
941.936
Skewness
2.131
Kurtosis
6.462
Outliers
3,702769 low · 2933 high
CD38:APC H7-A LOGICALinteger5,1790-3563 – 9402mean 3186
Min.
-3563
1st Qu.
2665
Median
3035
Mean
3185.68
3rd Qu.
3499
Max.
9402
Std. dev
899.579
Skewness
0.9238
Kurtosis
2.268
Outliers
4,372641 low · 3731 high
CD3:APC-A LOGICALinteger5,8820-1243 – 8735mean 3551
Min.
-1243
1st Qu.
2661
Median
3143
Mean
3550.59
3rd Qu.
3701
Max.
8735
Std. dev
1634.46
Skewness
1.157
Kurtosis
0.5912
Outliers
8,8591033 low · 7826 high
CD4+CD20:PB-A LOGICALinteger6,3360-1294 – 8798mean 3721
Min.
-1294
1st Qu.
3157
Median
3585
Mean
3720.86
3rd Qu.
4185.5
Max.
8798
Std. dev
1229.81
Skewness
0.3312
Kurtosis
0.7102
Zeros
1
Outliers
7,8352342 low · 5493 high
CD45:PO-A LOGICALinteger4,9310-724 – 7896mean 4872
Min.
-724
1st Qu.
4832
Median
5114
Mean
4871.65
3rd Qu.
5390
Max.
7896
Std. dev
956.455
Skewness
-2.311
Kurtosis
5.495
Outliers
5,9425804 low · 138 high
CD56+IgK:PE-A LOGICALinteger6,3800-1573 – 11590mean 3604
Min.
-1573
1st Qu.
3180
Median
3730
Mean
3604.02
3rd Qu.
4152
Max.
11590
Std. dev
1168.69
Skewness
-0.2245
Kurtosis
1.193
Zeros
2
Outliers
5,9203983 low · 1937 high
CD5:PerCP Cy5-5-A LOGICALinteger5,8230-1287 – 13155mean 2990
Min.
-1287
1st Qu.
2209
Median
2533
Mean
2990.25
3rd Qu.
3068
Max.
13155
Std. dev
1344.39
Skewness
1.48
Kurtosis
1.317
Zeros
1
Outliers
8,021265 low · 7756 high
CD8+IgL:FITC-A LOGICALinteger6,0640-1729 – 10412mean 4034
Min.
-1729
1st Qu.
3717
Median
4069
Mean
4033.9
3rd Qu.
4414
Max.
10412
Std. dev
1092.56
Skewness
-0.2308
Kurtosis
1.534
Outliers
10,6255879 low · 4746 high
FSC-A LINEARinteger5,8780-2492 – 10383mean 2809
Min.
-2492
1st Qu.
1807
Median
3157
Mean
2808.73
3rd Qu.
3724
Max.
10383
Std. dev
1242.13
Skewness
-0.4041
Kurtosis
0.2304
Zeros
2
Outliers
21070 low · 140 high
SSC-A Exp-SSC Lowinteger7,8090-2687 – 11554mean 4073
Min.
-2687
1st Qu.
1416
Median
5212
Mean
4073.09
3rd Qu.
5860
Max.
11554
Std. dev
2241.86
Skewness
-0.466
Kurtosis
-1.33
Zeros
1
Population ID (name)factor280Neutrophils25,685other type of Debris4,963CD4+CD8-4,251Monocytes2,540CD8+CD4-2,497debris neutrophils2,045+22 more
Neutrophils25,685other type of Debris4,963CD4+CD8-4,251Monocytes2,540CD8+CD4-2,497debris neutrophils2,045+22 more
Levels
28
Used
28
Rows per level
Neutrophils25,685other type of Debris4,963CD4+CD8-4,251Monocytes2,540CD8+CD4-2,497debris neutrophils2,045Eosinophils1,631doublets neutrophils1,303Mature SIg Kappa1,071CD56dim901Mature SIg Lambda829TCRgd+484debris T cells314Basophils289Monocytoid DC288doublets T cells192doublets monocytes137CD56bright112doublets eosinophils110Plasmocytoid DC82TCRgd-70doublets B cells51doublets NK cells46debris axis31Myeloid DC23doublets axis20other type of Doublets20debris B cells14
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.22 | 2025-10-29 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.21 | 2025-04-15 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.20 | 2024-10-29 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.19 | 2024-04-30 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.18 | 2023-10-24 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.17 | 2023-04-25 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.16 | 2022-11-01 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.15 | 2022-04-26 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.14 | 2021-10-26 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.13 | 2021-05-19 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.12 | 2020-10-27 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 731 KB | exact |
| 3.11 | 2020-04-27 | 49,999 × 11 | – | rda · bzip2 version 3 · 731 KB | exact |