Cytometry3
Cytometry3 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
49,999 × 11
Missing
0
Format
rda · bzip2
version 3 · 741 KB
File
data/Cytometry3.RData
Fingerprint
7cd6606e
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,4480-1500 – 9777mean 2334
Min.
-1500
1st Qu.
1917
Median
2168
Mean
2334.43
3rd Qu.
2484
Max.
9777
Std. dev
799.627
Skewness
2.602
Kurtosis
8.954
Outliers
3,641305 low · 3336 high
CD38:APC H7-A LOGICALinteger4,3740-1152 – 8517mean 2538
Min.
-1152
1st Qu.
2095
Median
2362
Mean
2538.16
3rd Qu.
2759
Max.
8517
Std. dev
738.259
Skewness
1.597
Kurtosis
3.943
Outliers
4,047267 low · 3780 high
CD3:APC-A LOGICALinteger5,9870-357 – 8707mean 2890
Min.
-357
1st Qu.
1830
Median
2339
Mean
2889.77
3rd Qu.
3225
Max.
8707
Std. dev
1677.07
Skewness
1.503
Kurtosis
1.274
Outliers
6,2721 low · 6271 high
CD4+CD20:PB-A LOGICALinteger6,1410-585 – 8401mean 2549
Min.
-585
1st Qu.
1527
Median
2096
Mean
2549.47
3rd Qu.
3273
Max.
8401
Std. dev
1463.68
Skewness
1.079
Kurtosis
0.4017
Outliers
2,1700 low · 2170 high
CD45:PO-A LOGICALinteger6,1110-1742 – 8615mean 2711
Min.
-1742
1st Qu.
1180
Median
1866
Mean
2711.04
3rd Qu.
5127
Max.
8615
Std. dev
1928.98
Skewness
0.4726
Kurtosis
-1.39
Zeros
5
CD56+IgK:PE-A LOGICALinteger6,3970-1245 – 9932mean 2319
Min.
-1245
1st Qu.
1359
Median
1947
Mean
2319.3
3rd Qu.
3154
Max.
9932
Std. dev
1365.06
Skewness
0.9204
Kurtosis
0.4392
Outliers
7030 low · 703 high
CD5:PerCP Cy5-5-A LOGICALinteger5,2260-1951 – 10534mean 2757
Min.
-1951
1st Qu.
2066
Median
2286
Mean
2756.61
3rd Qu.
2680
Max.
10534
Std. dev
1267.43
Skewness
1.907
Kurtosis
2.535
Outliers
7,931152 low · 7779 high
CD8+IgL:FITC-A LOGICALinteger7,4760-2409 – 10685mean 2498
Min.
-2409
1st Qu.
1275
Median
2175
Mean
2498.08
3rd Qu.
3774
Max.
10685
Std. dev
1660.18
Skewness
0.5159
Kurtosis
-0.3479
Zeros
1
Outliers
520 low · 52 high
FSC-A LINEARinteger5,6420-2530 – 10501mean 1680
Min.
-2530
1st Qu.
941
Median
1415
Mean
1679.87
3rd Qu.
2036
Max.
10501
Std. dev
1148.98
Skewness
1.27
Kurtosis
2.256
Zeros
3
Outliers
4,546107 low · 4439 high
SSC-A Exp-SSC Lowinteger7,1180-3664 – 12169mean 3016
Min.
-3664
1st Qu.
1809
Median
2877
Mean
3015.95
3rd Qu.
3973
Max.
12169
Std. dev
1593.79
Skewness
0.4981
Kurtosis
-0.077
Zeros
1
Outliers
4969 low · 487 high
Population ID (name)factor290other type of Debris32,491Neutrophils5,756CD4+CD8-3,363debris neutrophils1,683CD8+CD4-1,350Monocytes848+23 more
other type of Debris32,491Neutrophils5,756CD4+CD8-3,363debris neutrophils1,683CD8+CD4-1,350Monocytes848+23 more
Levels
29
Used
29
Rows per level
other type of Debris32,491Neutrophils5,756CD4+CD8-3,363debris neutrophils1,683CD8+CD4-1,350Monocytes848debris T cells688doublets neutrophils642Eosinophils573TCRgd+544Mature SIg Kappa504Mature SIg Lambda390doublets T cells296Basophils161CD56dim124doublets eosinophils109TCRgd-93debris B cells57doublets B cells56doublets monocytes49doublets NK cells44CD4+CD8dim42other type of Doublets36Monocytoid DC35CD56bright25debris axis16doublets axis14Neutrophils (U.S.)6Myeloid DC4
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.22 | 2025-10-29 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.21 | 2025-04-15 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.20 | 2024-10-29 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.19 | 2024-04-30 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.18 | 2023-10-24 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.17 | 2023-04-25 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.16 | 2022-11-01 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.15 | 2022-04-26 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.14 | 2021-10-26 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.13 | 2021-05-19 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.12 | 2020-10-27 | 49,999 × 11 | Unchanged | rda · bzip2 version 3 · 741 KB | exact |
| 3.11 | 2020-04-27 | 49,999 × 11 | – | rda · bzip2 version 3 · 741 KB | exact |