Cytometry39
Cytometry39
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
50,000 × 11
Missing
0
Format
rda · bzip2
version 3 · 705 KB
File
data/Cytometry39.RData
Fingerprint
94940e01
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger3,3110-1871 – 7497mean 2908
Min.
-1871
1st Qu.
2554
Median
2684
Mean
2908.47
3rd Qu.
2826
Max.
7497
Std. dev
913.27
Skewness
3.045
Kurtosis
8.477
Outliers
4,818774 low · 4044 high
CD38:APC H7-A LOGICALinteger3,9160-2479 – 8705mean 3233
Min.
-2479
1st Qu.
2901
Median
3120
Mean
3232.85
3rd Qu.
3381
Max.
8705
Std. dev
607.697
Skewness
1.184
Kurtosis
5.72
Outliers
5,588922 low · 4666 high
CD3:APC-A LOGICALinteger4,8160-2058 – 10428mean 3439
Min.
-2058
1st Qu.
2222
Median
2722
Mean
3438.88
3rd Qu.
3400
Max.
10428
Std. dev
1918.43
Skewness
1.179
Kurtosis
-0.1628
Outliers
10,40628 low · 10378 high
CD4+CD20:PB-A LOGICALinteger5,6890-196 – 9574mean 3468
Min.
-196
1st Qu.
2640
Median
3138
Mean
3468.18
3rd Qu.
3890
Max.
9574
Std. dev
1383.46
Skewness
0.8433
Kurtosis
-0.0631
Outliers
5,57757 low · 5520 high
CD45:PO-A LOGICALinteger3,64901422 – 7929mean 4010
Min.
1422
1st Qu.
3372
Median
3774
Mean
4010.35
3rd Qu.
4909
Max.
7929
Std. dev
902.046
Skewness
0.1923
Kurtosis
-1.051
Outliers
120 low · 12 high
CD56+IgK:PE-A LOGICALinteger5,5080-2454 – 11365mean 2735
Min.
-2454
1st Qu.
2039
Median
2556
Mean
2734.52
3rd Qu.
3089
Max.
11365
Std. dev
1045.31
Skewness
1.384
Kurtosis
2.877
Outliers
3,33492 low · 3242 high
CD5:PerCP Cy5-5-A LOGICALinteger4,5900-1936 – 10602mean 3268
Min.
-1936
1st Qu.
2541
Median
2675
Mean
3267.94
3rd Qu.
3021
Max.
10602
Std. dev
1285.76
Skewness
1.504
Kurtosis
0.7142
Outliers
10,615217 low · 10398 high
CD8+IgL:FITC-A LOGICALinteger5,7460-81 – 9541mean 3405
Min.
-81
1st Qu.
2580.75
Median
3166
Mean
3405
3rd Qu.
3721
Max.
9541
Std. dev
1263.52
Skewness
1.01
Kurtosis
0.5188
Outliers
5,30417 low · 5287 high
FSC-A LINEARinteger5,4990-4847 – 9547mean 2802
Min.
-4847
1st Qu.
1791
Median
3231
Mean
2801.56
3rd Qu.
3882
Max.
9547
Std. dev
1299
Skewness
-0.3844
Kurtosis
-0.5529
Zeros
2
Outliers
7837 low · 41 high
SSC-A Exp-SSC Lowinteger6,7110-3736 – 12418mean 3583
Min.
-3736
1st Qu.
1238
Median
4100
Mean
3583.13
3rd Qu.
5657
Max.
12418
Std. dev
2214.36
Skewness
-0.0926
Kurtosis
-1.698
Outliers
10 low · 1 high
Population ID (name)factor250Neutrophils (main population)22,993CD4+CD8negativo6,009Debris RBC CD8-5,601Monocytes3,368CD8+CD4-CD5+2,704Mature SIg Kappa1,591+19 more
Neutrophils (main population)22,993CD4+CD8negativo6,009Debris RBC CD8-5,601Monocytes3,368CD8+CD4-CD5+2,704Mature SIg Kappa1,591+19 more
Levels
25
Used
25
Rows per level
Neutrophils (main population)22,993CD4+CD8negativo6,009Debris RBC CD8-5,601Monocytes3,368CD8+CD4-CD5+2,704Mature SIg Kappa1,591Debris Neutrophils CD3-1,419Mature SIg Lambda1,282NK CELLS1,180Eosinophils791EVENTS692CD8+CD4dim642Basophils408TCRgd+CD5-CD8-280Monocytoid DC251TCRgd+CD5+CD8-200TCRgd+CD5+CD8+159Doublets Neutrophils125Plasmacytoid DC103TCRgd-CD5+68TCRgd+CD5-CD8+41Doublets T cells SSC high CD8-28Myeloid DC27Doublets T cells SSC high CD8+20Doublets B CELLS18
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.22 | 2025-10-29 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.21 | 2025-04-15 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.20 | 2024-10-29 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.19 | 2024-04-30 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.18 | 2023-10-24 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.17 | 2023-04-25 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.16 | 2022-11-01 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.15 | 2022-04-26 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.14 | 2021-10-26 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.13 | 2021-05-19 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.12 | 2020-10-27 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 705 KB | exact |
| 3.11 | 2020-04-27 | 50,000 × 11 | – | rda · bzip2 version 3 · 705 KB | exact |