Cytometry5
Cytometry5 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
50,000 × 11
Missing
0
Format
rda · bzip2
version 3 · 734 KB
File
data/Cytometry5.RData
Fingerprint
41d55e55
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,5790-1361 – 8366mean 2648
Min.
-1361
1st Qu.
2243
Median
2573
Mean
2648.35
3rd Qu.
2902
Max.
8366
Std. dev
810.508
Skewness
2.017
Kurtosis
7.392
Outliers
3,158912 low · 2246 high
CD38:APC H7-A LOGICALinteger5,4330-2111 – 10322mean 3266
Min.
-2111
1st Qu.
2756
Median
3170
Mean
3266.28
3rd Qu.
3650
Max.
10322
Std. dev
916.441
Skewness
0.5251
Kurtosis
2.383
Outliers
3,4241019 low · 2405 high
CD3:APC-A LOGICALinteger5,7920-2931 – 9227mean 3724
Min.
-2931
1st Qu.
2770
Median
3215
Mean
3723.8
3rd Qu.
3791
Max.
9227
Std. dev
1665.41
Skewness
1.187
Kurtosis
0.4081
Outliers
9,516763 low · 8753 high
CD4+CD20:PB-A LOGICALinteger5,7920-992 – 7962mean 3535
Min.
-992
1st Qu.
3022
Median
3405
Mean
3534.82
3rd Qu.
3865
Max.
7962
Std. dev
1063.29
Skewness
0.5789
Kurtosis
1.328
Outliers
7,0622186 low · 4876 high
CD45:PO-A LOGICALinteger4,0280-492 – 7741mean 5113
Min.
-492
1st Qu.
4992
Median
5237
Mean
5113.28
3rd Qu.
5482
Max.
7741
Std. dev
695.426
Skewness
-2.811
Kurtosis
10.42
Outliers
3,8343723 low · 111 high
CD56+IgK:PE-A LOGICALinteger5,9940-1661 – 10148mean 3882
Min.
-1661
1st Qu.
3449
Median
4042
Mean
3882.44
3rd Qu.
4543
Max.
10148
Std. dev
1126.02
Skewness
-0.6856
Kurtosis
1.121
Outliers
3,8623329 low · 533 high
CD5:PerCP Cy5-5-A LOGICALinteger5,7050-1871 – 8825mean 3064
Min.
-1871
1st Qu.
2226
Median
2572
Mean
3064.19
3rd Qu.
3116
Max.
8825
Std. dev
1394.08
Skewness
1.382
Kurtosis
0.7732
Outliers
8,850161 low · 8689 high
CD8+IgL:FITC-A LOGICALinteger5,7440-1316 – 9520mean 4328
Min.
-1316
1st Qu.
3909
Median
4357
Mean
4327.84
3rd Qu.
4835
Max.
9520
Std. dev
1034.14
Skewness
-0.4049
Kurtosis
1.382
Outliers
5,4283437 low · 1991 high
FSC-A LINEARinteger6,0380-2940 – 9814mean 2939
Min.
-2940
1st Qu.
2132.75
Median
3158
Mean
2939
3rd Qu.
3689
Max.
9814
Std. dev
1144.22
Skewness
-0.3822
Kurtosis
1.25
Zeros
1
Outliers
794491 low · 303 high
SSC-A Exp-SSC Lowinteger7,4500-2111 – 11050mean 4394
Min.
-2111
1st Qu.
2000
Median
5373
Mean
4393.95
3rd Qu.
6052
Max.
11050
Std. dev
2166.47
Skewness
-0.6317
Kurtosis
-1.111
Population ID (name)factor310Neutrophils30,950CD4+CD8-3,562CD8+CD4-3,309Monocytes2,924other type of Debris2,348debris neutrophils2,008+25 more
Neutrophils30,950CD4+CD8-3,562CD8+CD4-3,309Monocytes2,924other type of Debris2,348debris neutrophils2,008+25 more
Levels
31
Used
31
Rows per level
Neutrophils30,950CD4+CD8-3,562CD8+CD4-3,309Monocytes2,924other type of Debris2,348debris neutrophils2,008TCRgd+1,208CD56dim708doublets neutrophils397Eosinophils382debris T cells361Mature SIg Kappa346Mature SIg Lambda213doublets eosinophils206doublets T cells206Basophils164Monocytoid DC151TCRgd-116CD56bright106doublets monocytes67doublets NK cells54debris axis49CD4+CD8dim30Neutrophils (U.S.)29Plasmocytoid DC26Myeloid DC23PLASMA CELLS18doublets axis11debris B cells10doublets B cells9other type of Doublets9
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.22 | 2025-10-29 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.21 | 2025-04-15 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.20 | 2024-10-29 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.19 | 2024-04-30 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.18 | 2023-10-24 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.17 | 2023-04-25 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.16 | 2022-11-01 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.15 | 2022-04-26 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.14 | 2021-10-26 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.13 | 2021-05-19 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.12 | 2020-10-27 | 50,000 × 11 | Unchanged | rda · bzip2 version 3 · 734 KB | exact |
| 3.11 | 2020-04-27 | 50,000 × 11 | – | rda · bzip2 version 3 · 734 KB | exact |