Cytometry30
Cytometry30
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
236,886 × 11
Missing
0
Format
rda · bzip2
version 3 · 3.1 MB
File
data/Cytometry30.RData
Fingerprint
37716f06
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,4310-1555 – 8543mean 2812
Min.
-1555
1st Qu.
2603
Median
2738
Mean
2811.72
3rd Qu.
2871
Max.
8543
Std. dev
556.492
Skewness
4.587
Kurtosis
24.38
Outliers
12,3783552 low · 8826 high
CD38:APC H7-A LOGICALinteger5,3450-2315 – 12097mean 3217
Min.
-2315
1st Qu.
2911
Median
3064
Mean
3216.92
3rd Qu.
3255
Max.
12097
Std. dev
621.055
Skewness
2.244
Kurtosis
9.905
Outliers
38,9795386 low · 33593 high
CD3:APC-A LOGICALinteger5,712072 – 10641mean 3679
Min.
72
1st Qu.
2887
Median
3326
Mean
3678.75
3rd Qu.
3678
Max.
10641
Std. dev
1465.69
Skewness
1.317
Kurtosis
0.6714
Outliers
41,6682970 low · 38698 high
CD4+CD20:PB-A LOGICALinteger6,3080-1292 – 12857mean 3239
Min.
-1292
1st Qu.
2539
Median
2930
Mean
3238.76
3rd Qu.
3779
Max.
12857
Std. dev
1144.08
Skewness
1.05
Kurtosis
0.6438
Outliers
10,31469 low · 10245 high
CD45:PO-A LOGICALinteger3,9620-1580 – 9363mean 4163
Min.
-1580
1st Qu.
3727
Median
4021
Mean
4162.77
3rd Qu.
4802
Max.
9363
Std. dev
745.835
Skewness
-0.0014
Kurtosis
-0.1692
Outliers
310174 low · 136 high
CD56+IgK:PE-A LOGICALinteger6,6520-951 – 10564mean 4344
Min.
-951
1st Qu.
4023
Median
4498
Mean
4344.02
3rd Qu.
4833
Max.
10564
Std. dev
1124.84
Skewness
-0.296
Kurtosis
0.0357
Outliers
49,66135225 low · 14436 high
CD5:PerCP Cy5-5-A LOGICALinteger5,8320-1335 – 9427mean 3090
Min.
-1335
1st Qu.
2489
Median
2641
Mean
3089.93
3rd Qu.
2877
Max.
9427
Std. dev
1161.67
Skewness
1.83
Kurtosis
1.956
Outliers
42,5122147 low · 40365 high
CD8+IgL:FITC-A LOGICALinteger5,9360-910 – 10545mean 3945
Min.
-910
1st Qu.
3487
Median
3818
Mean
3945.38
3rd Qu.
4301
Max.
10545
Std. dev
1024.6
Skewness
0.4122
Kurtosis
0.4835
Outliers
36,54215664 low · 20878 high
FSC-A LINEARinteger6,7690-4943 – 12963mean 3038
Min.
-4943
1st Qu.
2069
Median
3423
Mean
3038.35
3rd Qu.
3880
Max.
12963
Std. dev
1146.19
Skewness
-0.6141
Kurtosis
0.4073
Zeros
5
Outliers
727230 low · 497 high
SSC-A Exp-SSC Lowinteger8,1740-5476 – 15499mean 3903
Min.
-5476
1st Qu.
1349.25
Median
4975
Mean
3902.94
3rd Qu.
5640
Max.
15499
Std. dev
2098.44
Skewness
-0.3908
Kurtosis
-1.442
Outliers
71 low · 6 high
Population ID (name)factor370Neutrophils (main population)129,302CD4+CD8negativo21,805Monocytes19,798Debris RBC CD8+15,832NK CELLS13,175CD8+CD4-CD5+6,526+31 more
Neutrophils (main population)129,302CD4+CD8negativo21,805Monocytes19,798Debris RBC CD8+15,832NK CELLS13,175CD8+CD4-CD5+6,526+31 more
Levels
37
Used
37
Rows per level
Neutrophils (main population)129,302CD4+CD8negativo21,805Monocytes19,798Debris RBC CD8+15,832NK CELLS13,175CD8+CD4-CD5+6,526CD8+CD4dim6,020Eosinophils5,765Monocytoid DC3,635Mature SIg Kappa2,603EVENTS1,595Mature SIg Lambda1,460Other type of debris CD5+CD8-1,269Debris RBC CD8-1,073Basophils889TCRgd+CD5-CD8+832CD4+CD8dim786Neutrophils (unspecific staining)784Plasmacytoid DC687Debris Neutrophils CD3-544Doublets Eosinophils475TCRgd+CD5+CD8-455TCRgd-CD5+336TCRgd+CD5+CD8+260Myeloid DC168CD8+CD4-CD5-140Doublets T cells SSC high CD8-122Doublets Neutrophils110TCRgd+CD5-CD8-106Other type of debris CD5+CD8+71Doublets T cells SSC high CD8+68Doublets B CELLS44Other type of debris CD5+++CD8-CD38+42PC SIg Kappa35Doublets T cells TCRgd-27PC SIg Lambda24Debris T cells CD38 neg23
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.22 | 2025-10-29 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.21 | 2025-04-15 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.20 | 2024-10-29 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.19 | 2024-04-30 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.18 | 2023-10-24 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.17 | 2023-04-25 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.16 | 2022-11-01 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.15 | 2022-04-26 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.14 | 2021-10-26 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.13 | 2021-05-19 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.12 | 2020-10-27 | 236,886 × 11 | Unchanged | rda · bzip2 version 3 · 3.1 MB | exact |
| 3.11 | 2020-04-27 | 236,886 × 11 | – | rda · bzip2 version 3 · 3.1 MB | exact |