Cytometry33
Cytometry33
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
135,798 × 11
Missing
0
Format
rda · xz
version 3 · 1.9 MB
File
data/Cytometry33.RData
Fingerprint
a074198a
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,7260-1999 – 9319mean 2958
Min.
-1999
1st Qu.
2598
Median
2814
Mean
2958.38
3rd Qu.
3072
Max.
9319
Std. dev
751.085
Skewness
2.982
Kurtosis
10.44
Outliers
8,401898 low · 7503 high
CD38:APC H7-A LOGICALinteger5,3640-1983 – 9880mean 3434
Min.
-1983
1st Qu.
3056
Median
3281
Mean
3434.29
3rd Qu.
3586
Max.
9880
Std. dev
709.36
Skewness
1.406
Kurtosis
4.598
Outliers
16,7422418 low · 14324 high
CD3:APC-A LOGICALinteger6,0250-1315 – 10380mean 3639
Min.
-1315
1st Qu.
2908
Median
3463
Mean
3638.88
3rd Qu.
3837
Max.
10380
Std. dev
1376.48
Skewness
1.405
Kurtosis
1.774
Outliers
17,0331536 low · 15497 high
CD4+CD20:PB-A LOGICALinteger6,2710-2140 – 9922mean 3636
Min.
-2140
1st Qu.
2863
Median
3323
Mean
3635.79
3rd Qu.
4329
Max.
9922
Std. dev
1220
Skewness
0.7678
Kurtosis
0.1884
Outliers
3,68727 low · 3660 high
CD45:PO-A LOGICALinteger4,1900-953 – 9959mean 4434
Min.
-953
1st Qu.
4028
Median
4312
Mean
4434.48
3rd Qu.
4979
Max.
9959
Std. dev
659.89
Skewness
-0.2093
Kurtosis
1.723
Outliers
1,5631158 low · 405 high
CD56+IgK:PE-A LOGICALinteger6,9230-2771 – 12206mean 4508
Min.
-2771
1st Qu.
4174
Median
4616.5
Mean
4507.98
3rd Qu.
4993
Max.
12206
Std. dev
1127.86
Skewness
-0.2426
Kurtosis
0.8748
Outliers
23,90916702 low · 7207 high
CD5:PerCP Cy5-5-A LOGICALinteger5,9920-2509 – 8698mean 3075
Min.
-2509
1st Qu.
2501
Median
2681
Mean
3074.77
3rd Qu.
2949
Max.
8698
Std. dev
1170.72
Skewness
2.089
Kurtosis
3.306
Outliers
20,1911570 low · 18621 high
CD8+IgL:FITC-A LOGICALinteger6,1910-1345 – 10349mean 3991
Min.
-1345
1st Qu.
3688
Median
4002
Mean
3991.48
3rd Qu.
4353
Max.
10349
Std. dev
948.066
Skewness
0.025
Kurtosis
1.495
Outliers
24,53415819 low · 8715 high
FSC-A LINEARinteger6,3780-5175 – 9931mean 2991
Min.
-5175
1st Qu.
2151
Median
3254
Mean
2990.89
3rd Qu.
3749
Max.
9931
Std. dev
1067.18
Skewness
-0.5459
Kurtosis
1.223
Zeros
2
Outliers
1,092536 low · 556 high
SSC-A Exp-SSC Lowinteger8,0370-4339 – 12737mean 4256
Min.
-4339
1st Qu.
1725
Median
5330
Mean
4256.04
3rd Qu.
5971
Max.
12737
Std. dev
2132.45
Skewness
-0.4518
Kurtosis
-1.337
Zeros
2
Outliers
20 low · 2 high
Population ID (name)factor260Neutrophils (main population)70,627CD4+CD8negativo12,647Monocytes12,499NK CELLS9,350Eosinophils7,834Monocytoid DC3,857+20 more
Neutrophils (main population)70,627CD4+CD8negativo12,647Monocytes12,499NK CELLS9,350Eosinophils7,834Monocytoid DC3,857+20 more
Levels
26
Used
26
Rows per level
Neutrophils (main population)70,627CD4+CD8negativo12,647Monocytes12,499NK CELLS9,350Eosinophils7,834Monocytoid DC3,857Debris RBC CD8-3,819Mature SIg Kappa2,930EVENTS2,875Mature SIg Lambda2,424Basophils1,536Other type of debris CD5+CD8-1,398CD8+CD4-CD5+1,087Other type of debris CD5+CD8+576Doublets Eosinophils467Plasmacytoid DC406CD8+CD4dim327Neutrophils (unspecific staining)322Debris RBC CD8+313Doublets Neutrophils175TCRgd-CD5+137Doublets T cells SSC high CD8-62Doublets B CELLS60Other type of debris CD4++28TCRgd+CD5+CD8-26Doublets T cells TCRgd-16
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.22 | 2025-10-29 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.21 | 2025-04-15 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.20 | 2024-10-29 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.19 | 2024-04-30 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.18 | 2023-10-24 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.17 | 2023-04-25 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.16 | 2022-11-01 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.15 | 2022-04-26 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.14 | 2021-10-26 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.13 | 2021-05-19 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.12 | 2020-10-27 | 135,798 × 11 | Unchanged | rda · xz version 3 · 1.9 MB | exact |
| 3.11 | 2020-04-27 | 135,798 × 11 | – | rda · xz version 3 · 1.9 MB | exact |