Cytometry1
Cytometry1 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
82,810 × 11
Missing
0
Format
rda · bzip2
version 3 · 1.1 MB
File
data/Cytometry1.RData
Fingerprint
a9076239
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger5,0190-1555 – 12683mean 2584
Min.
-1555
1st Qu.
2209
Median
2456
Mean
2584.18
3rd Qu.
2703
Max.
12683
Std. dev
886.234
Skewness
2.807
Kurtosis
10.49
Outliers
7,2172319 low · 4898 high
CD38:APC H7-A LOGICALinteger5,1980-2281 – 11865mean 3119
Min.
-2281
1st Qu.
2545
Median
2829
Mean
3119.49
3rd Qu.
3373
Max.
11865
Std. dev
921.799
Skewness
1.341
Kurtosis
2.459
Outliers
8,989369 low · 8620 high
CD3:APC-A LOGICALinteger5,2810150 – 10785mean 3916
Min.
150
1st Qu.
3160
Median
3464
Mean
3915.98
3rd Qu.
3814.75
Max.
10785
Std. dev
1488.17
Skewness
1.191
Kurtosis
0.2966
Outliers
19,6854054 low · 15631 high
CD4+CD20:PB-A LOGICALinteger6,9150-1739 – 10563mean 3675
Min.
-1739
1st Qu.
3245.25
Median
3576
Mean
3674.67
3rd Qu.
4111
Max.
10563
Std. dev
1209.36
Skewness
0.0879
Kurtosis
1.057
Outliers
17,8177348 low · 10469 high
CD45:PO-A LOGICALinteger4,098029 – 11358mean 4736
Min.
29
1st Qu.
4404
Median
4628
Mean
4735.94
3rd Qu.
5296
Max.
11358
Std. dev
705.882
Skewness
-1.274
Kurtosis
6.076
Outliers
2,7532622 low · 131 high
CD56+IgK:PE-A LOGICALinteger6,6140-1624 – 11256mean 4031
Min.
-1624
1st Qu.
3664
Median
4110.5
Mean
4031.25
3rd Qu.
4463
Max.
11256
Std. dev
1185.67
Skewness
-0.1564
Kurtosis
0.6405
Outliers
19,33610587 low · 8749 high
CD5:PerCP Cy5-5-A LOGICALinteger6,0590-930 – 9508mean 3301
Min.
-930
1st Qu.
2457
Median
2780
Mean
3301
3rd Qu.
3472
Max.
9508
Std. dev
1362.71
Skewness
1.335
Kurtosis
0.6086
Outliers
14,292121 low · 14171 high
CD8+IgL:FITC-A LOGICALinteger5,7430-794 – 9880mean 4222
Min.
-794
1st Qu.
3912
Median
4147
Mean
4222.22
3rd Qu.
4477
Max.
9880
Std. dev
1022.1
Skewness
0.1055
Kurtosis
0.8828
Outliers
20,9899984 low · 11005 high
FSC-A LINEARinteger4,6040-3768 – 11471mean 2678
Min.
-3768
1st Qu.
1917
Median
2962
Mean
2677.53
3rd Qu.
3300
Max.
11471
Std. dev
868.93
Skewness
-0.6014
Kurtosis
1.202
Zeros
3
Outliers
374228 low · 146 high
SSC-A Exp-SSC Lowinteger6,9530-2909 – 13580mean 4383
Min.
-2909
1st Qu.
1678
Median
5569
Mean
4383.09
3rd Qu.
6124
Max.
13580
Std. dev
2154.34
Skewness
-0.5198
Kurtosis
-1.416
Outliers
20 low · 2 high
Population ID (name)factor350Neutrophils47,139CD4+CD8-7,697Monocytes6,430CD8+CD4-5,787CD56dim3,092debris RBC2,682+29 more
Neutrophils47,139CD4+CD8-7,697Monocytes6,430CD8+CD4-5,787CD56dim3,092debris RBC2,682+29 more
Levels
35
Used
35
Rows per level
Neutrophils47,139CD4+CD8-7,697Monocytes6,430CD8+CD4-5,787CD56dim3,092debris RBC2,682Eosinophils2,131Mature SIg Kappa1,577TCRgd+1,272Mature SIg Lambda1,003Monocytoid DC563Basophils536debris neutrophils515other type of Debris485debris monocytes279debris axis255Plasmocytoid DC207CD4+CD8dim183debris T cells156TCRgd-123doublets neutrophils116debris NK cells100CD56bright97doublets axis65doublets eosinophils60other type of Doublets53debris B cells46doublets T cells45Myeloid DC45debris eosinophils15Other nucleated cells15CD4+CD8+13doublets monocytes13PLASMA CELLS10doublets B cells5
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.22 | 2025-10-29 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.21 | 2025-04-15 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.20 | 2024-10-29 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.19 | 2024-04-30 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.18 | 2023-10-24 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.17 | 2023-04-25 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.16 | 2022-11-01 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.15 | 2022-04-26 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.14 | 2021-10-26 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.13 | 2021-05-19 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.12 | 2020-10-27 | 82,810 × 11 | Unchanged | rda · bzip2 version 3 · 1.1 MB | exact |
| 3.11 | 2020-04-27 | 82,810 × 11 | – | rda · bzip2 version 3 · 1.1 MB | exact |