Cytometry31
Cytometry31
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
229,216 × 11
Missing
0
Format
rda · xz
version 3 · 3.1 MB
File
data/Cytometry31.RData
Fingerprint
f112faec
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger4,7040-1572 – 9106mean 2846
Min.
-1572
1st Qu.
2567
Median
2697
Mean
2846.06
3rd Qu.
2829
Max.
9106
Std. dev
754.153
Skewness
3.606
Kurtosis
12.98
Outliers
18,2294047 low · 14182 high
CD38:APC H7-A LOGICALinteger5,5340-3386 – 13630mean 3258
Min.
-3386
1st Qu.
2920
Median
3093
Mean
3257.95
3rd Qu.
3352
Max.
13630
Std. dev
664.673
Skewness
1.793
Kurtosis
6.716
Outliers
34,8645288 low · 29576 high
CD3:APC-A LOGICALinteger5,8120-722 – 10195mean 3913
Min.
-722
1st Qu.
2900
Median
3313
Mean
3912.81
3rd Qu.
3916
Max.
10195
Std. dev
1702.67
Skewness
0.9557
Kurtosis
-0.5594
Outliers
54,203353 low · 53850 high
CD4+CD20:PB-A LOGICALinteger6,4490-2713 – 10010mean 3381
Min.
-2713
1st Qu.
2567
Median
3047
Mean
3380.66
3rd Qu.
3937
Max.
10010
Std. dev
1282.55
Skewness
0.9383
Kurtosis
0.1661
Outliers
8,99145 low · 8946 high
CD45:PO-A LOGICALinteger4,0010-1016 – 9275mean 4204
Min.
-1016
1st Qu.
3604
Median
3917
Mean
4204.18
3rd Qu.
5022
Max.
9275
Std. dev
815.96
Skewness
0.097
Kurtosis
-0.887
Outliers
10845 low · 63 high
CD56+IgK:PE-A LOGICALinteger6,5840-1970 – 10155mean 4106
Min.
-1970
1st Qu.
3284
Median
4126
Mean
4105.58
3rd Qu.
4634
Max.
10155
Std. dev
1145.24
Skewness
0.306
Kurtosis
-0.0578
Outliers
3,600135 low · 3465 high
CD5:PerCP Cy5-5-A LOGICALinteger5,9530-868 – 9971mean 3332
Min.
-868
1st Qu.
2510
Median
2670
Mean
3331.59
3rd Qu.
3386
Max.
9971
Std. dev
1355.1
Skewness
1.251
Kurtosis
-0.0712
Outliers
51,978210 low · 51768 high
CD8+IgL:FITC-A LOGICALinteger6,1880-1628 – 9620mean 3906
Min.
-1628
1st Qu.
3302
Median
3731
Mean
3906.47
3rd Qu.
4525
Max.
9620
Std. dev
1178.22
Skewness
0.4895
Kurtosis
-0.0861
Outliers
7,876388 low · 7488 high
FSC-A LINEARinteger6,7530-3414 – 13383mean 2899
Min.
-3414
1st Qu.
1892
Median
3230
Mean
2899.21
3rd Qu.
3818
Max.
13383
Std. dev
1167.66
Skewness
-0.0863
Kurtosis
0.4004
Zeros
1
Outliers
98384 low · 899 high
SSC-A Exp-SSC Lowinteger7,6960-4642 – 15473mean 3536
Min.
-4642
1st Qu.
1217
Median
4552
Mean
3535.56
3rd Qu.
5492
Max.
15473
Std. dev
2135.63
Skewness
-0.1098
Kurtosis
-1.669
Zeros
1
Outliers
80 low · 8 high
Population ID (name)factor370Neutrophils (main population)112,899CD4+CD8negativo27,484CD8+CD4-CD5+16,871Monocytes15,983NK CELLS12,765Debris RBC CD8-8,933+31 more
Neutrophils (main population)112,899CD4+CD8negativo27,484CD8+CD4-CD5+16,871Monocytes15,983NK CELLS12,765Debris RBC CD8-8,933+31 more
Levels
37
Used
37
Rows per level
Neutrophils (main population)112,899CD4+CD8negativo27,484CD8+CD4-CD5+16,871Monocytes15,983NK CELLS12,765Debris RBC CD8-8,933Mature SIg Kappa5,084CD8+CD4dim4,434Eosinophils3,382Basophils3,271Mature SIg Lambda3,159Debris RBC CD8+2,886TCRgd+CD5+CD8-2,504Monocytoid DC1,992EVENTS1,739Other type of debris CD5+CD8-1,084TCRgd-CD5+921Doublets Eosinophils772Neutrophils (unspecific staining)628Plasmacytoid DC419Debris Neutrophils CD3-305PC SIg Kappa179Myeloid DC165Other type of debris CD5+CD8+162Doublets T cells SSC high CD8+156PC SIg Lambda154Doublets T cells SSC high CD8-143Doublets B CELLS129CD4+CD8dim113Doublets T cells TCRgd-99TCRgd+CD5+CD8+89Doublets Neutrophils80CD8+CD4-CD5-63TCRgd+CD5-CD8-49TCRgd+CD5-CD8+43DOublets T cells TCRgd+40Other type of debris CD5+++CD8-CD38+37
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.22 | 2025-10-29 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.21 | 2025-04-15 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.20 | 2024-10-29 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.19 | 2024-04-30 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.18 | 2023-10-24 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.17 | 2023-04-25 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.16 | 2022-11-01 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.15 | 2022-04-26 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.14 | 2021-10-26 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.13 | 2021-05-19 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.12 | 2020-10-27 | 229,216 × 11 | Unchanged | rda · xz version 3 · 3.1 MB | exact |
| 3.11 | 2020-04-27 | 229,216 × 11 | – | rda · xz version 3 · 3.1 MB | exact |