Cytometry29
Cytometry29
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
300,000 × 11
Missing
0
Format
rda · bzip2
version 3 · 4.0 MB
File
data/Cytometry29.RData
Fingerprint
78b45a6e
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger5,2040-734 – 9868mean 2843
Min.
-734
1st Qu.
2610
Median
2715
Mean
2843.07
3rd Qu.
2827
Max.
9868
Std. dev
659.902
Skewness
3.964
Kurtosis
16.38
Outliers
26,0315943 low · 20088 high
CD38:APC H7-A LOGICALinteger5,1980-551 – 8720mean 3182
Min.
-551
1st Qu.
2928
Median
3059
Mean
3181.51
3rd Qu.
3237
Max.
8720
Std. dev
540.594
Skewness
1.784
Kurtosis
6.506
Outliers
49,6229925 low · 39697 high
CD3:APC-A LOGICALinteger6,7260-175 – 9009mean 4214
Min.
-175
1st Qu.
3321
Median
3588
Mean
4214.04
3rd Qu.
4401
Max.
9009
Std. dev
1534.01
Skewness
0.9733
Kurtosis
-0.4743
Outliers
70,7231732 low · 68991 high
CD4+CD20:PB-A LOGICALinteger6,7820-347 – 10150mean 4006
Min.
-347
1st Qu.
3334
Median
3822
Mean
4006.43
3rd Qu.
4629
Max.
10150
Std. dev
1131.88
Skewness
0.3004
Kurtosis
0.0203
Outliers
7,7672033 low · 5734 high
CD45:PO-A LOGICALinteger4,3330-299 – 8192mean 4335
Min.
-299
1st Qu.
3923
Median
4199
Mean
4335.26
3rd Qu.
4871
Max.
8192
Std. dev
601.511
Skewness
0.0689
Kurtosis
0.2867
Outliers
860596 low · 264 high
CD56+IgK:PE-A LOGICALinteger6,9400-246 – 9527mean 4319
Min.
-246
1st Qu.
3991
Median
4603
Mean
4319.03
3rd Qu.
4895
Max.
9527
Std. dev
1103.49
Skewness
-0.5549
Kurtosis
0.324
Outliers
44,36836290 low · 8078 high
CD5:PerCP Cy5-5-A LOGICALinteger5,9250-609 – 9326mean 3401
Min.
-609
1st Qu.
2553
Median
2716
Mean
3401.06
3rd Qu.
3477
Max.
9326
Std. dev
1380.38
Skewness
1.228
Kurtosis
-0.2095
Outliers
68,590180 low · 68410 high
CD8+IgL:FITC-A LOGICALinteger6,3440188 – 9776mean 3874
Min.
188
1st Qu.
3649
Median
4017
Mean
3874.3
3rd Qu.
4306
Max.
9776
Std. dev
1033.6
Skewness
-0.1622
Kurtosis
0.6389
Outliers
73,74751301 low · 22446 high
FSC-A LINEARinteger8,1130-5338 – 10919mean 3070
Min.
-5338
1st Qu.
2090
Median
3370
Mean
3070.17
3rd Qu.
3754
Max.
10919
Std. dev
1073.44
Skewness
0.1065
Kurtosis
1.992
Zeros
3
Outliers
4,021483 low · 3538 high
SSC-A Exp-SSC Lowinteger7,9940-3165 – 11590mean 3955
Min.
-3165
1st Qu.
1236
Median
4985
Mean
3955.29
3rd Qu.
5512
Max.
11590
Std. dev
2045.17
Skewness
-0.5765
Kurtosis
-1.319
Population ID (name)factor330Neutrophils (main population)182,290CD4+CD8negativo51,376CD8+CD4-CD5+12,381Monocytes12,215Mature SIg Kappa6,333EVENTS5,916+27 more
Neutrophils (main population)182,290CD4+CD8negativo51,376CD8+CD4-CD5+12,381Monocytes12,215Mature SIg Kappa6,333EVENTS5,916+27 more
Levels
33
Used
33
Rows per level
Neutrophils (main population)182,290CD4+CD8negativo51,376CD8+CD4-CD5+12,381Monocytes12,215Mature SIg Kappa6,333EVENTS5,916NK CELLS5,112Neutrophils (unspecific staining)3,354Mature SIg Lambda3,243Doublets Eosinophils3,215Debris RBC CD8-2,771Other type of debris CD5+CD8-1,987TCRgd+CD5+CD8-1,626Debris Neutrophils CD3-1,606Eosinophils1,048CD8+CD4dim847Doublets T cells SSC high CD8-755Basophils617Monocytoid DC582Doublets Neutrophils388Plasmacytoid DC341Debris RBC CD8+306Doublets B CELLS294TCRgd-CD5+294TCRgd+CD5+CD8+258Doublets T cells TCRgd-207Doublets T cells SSC high CD8+196Myeloid DC188Other type of debris CD4++117DOublets T cells TCRgd+80Debris Neutrophils CD3++27Other type of debris CD5+CD8+18Debris T cells CD38 neg12
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry2optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.22 | 2025-10-29 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.21 | 2025-04-15 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.20 | 2024-10-29 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.19 | 2024-04-30 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.18 | 2023-10-24 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.17 | 2023-04-25 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.16 | 2022-11-01 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.15 | 2022-04-26 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.14 | 2021-10-26 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.13 | 2021-05-19 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.12 | 2020-10-27 | 300,000 × 11 | Unchanged | rda · bzip2 version 3 · 4.0 MB | exact |
| 3.11 | 2020-04-27 | 300,000 × 11 | – | rda · bzip2 version 3 · 4.0 MB | exact |