Cytometry2
Cytometry2 %% ~~ data name/kind ... ~~
Bundled with optimalFlowData · exported, loads via data()
Class
data.frame
Dimensions
140,752 × 11
Missing
0
Format
rda · bzip2
version 3 · 1.9 MB
File
data/Cytometry2.RData
Fingerprint
22ea2c25
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
CD19/TCRgd:PE Cy7-A LOGICALinteger5,3410-3140 – 11934mean 2562
Min.
-3140
1st Qu.
2164
Median
2451
Mean
2562.09
3rd Qu.
2716
Max.
11934
Std. dev
885.248
Skewness
2.619
Kurtosis
9.05
Outliers
11,0013025 low · 7976 high
CD38:APC H7-A LOGICALinteger5,5200-4102 – 10877mean 3246
Min.
-4102
1st Qu.
2597
Median
2942
Mean
3246.06
3rd Qu.
3870
Max.
10877
Std. dev
921.275
Skewness
0.8687
Kurtosis
0.781
Outliers
1,348117 low · 1231 high
CD3:APC-A LOGICALinteger6,0230-406 – 11145mean 4404
Min.
-406
1st Qu.
3286
Median
3653
Mean
4404.37
3rd Qu.
6603
Max.
11145
Std. dev
1748.03
Skewness
0.5475
Kurtosis
-1.195
CD4+CD20:PB-A LOGICALinteger6,8150-1691 – 9605mean 4303
Min.
-1691
1st Qu.
3856
Median
4237
Mean
4303.14
3rd Qu.
5436.25
Max.
9605
Std. dev
1174.73
Skewness
-0.6386
Kurtosis
0.7463
Zeros
2
Outliers
3,3403292 low · 48 high
CD45:PO-A LOGICALinteger4,553074 – 9959mean 4755
Min.
74
1st Qu.
4231
Median
4687
Mean
4755.06
3rd Qu.
5389
Max.
9959
Std. dev
716.913
Skewness
-0.8782
Kurtosis
2.541
Outliers
2,1672088 low · 79 high
CD56+IgK:PE-A LOGICALinteger7,3920-2638 – 10368mean 3740
Min.
-2638
1st Qu.
2697
Median
3918
Mean
3740.25
3rd Qu.
4378
Max.
10368
Std. dev
1344.06
Skewness
-0.0433
Kurtosis
-0.1497
Outliers
1,323255 low · 1068 high
CD5:PerCP Cy5-5-A LOGICALinteger6,3220-1844 – 10973mean 3729
Min.
-1844
1st Qu.
2645
Median
3076
Mean
3728.68
3rd Qu.
5302
Max.
10973
Std. dev
1429.42
Skewness
0.6041
Kurtosis
-1.016
Outliers
121 low · 11 high
CD8+IgL:FITC-A LOGICALinteger5,9080-1617 – 8837mean 4049
Min.
-1617
1st Qu.
3316.75
Median
4158
Mean
4049.25
3rd Qu.
4499
Max.
8837
Std. dev
1155.61
Skewness
0.0181
Kurtosis
-0.123
Outliers
6,901534 low · 6367 high
FSC-A LINEARinteger5,0500-2062 – 9034mean 2581
Min.
-2062
1st Qu.
1727
Median
2906
Mean
2580.98
3rd Qu.
3341
Max.
9034
Std. dev
916.983
Skewness
-0.1928
Kurtosis
-0.5437
Zeros
1
Outliers
18053 low · 127 high
SSC-A Exp-SSC Lowinteger7,6880-2515 – 14407mean 3944
Min.
-2515
1st Qu.
1415
Median
4009
Mean
3943.63
3rd Qu.
6253
Max.
14407
Std. dev
2392.38
Skewness
-0.0408
Kurtosis
-1.735
Zeros
1
Outliers
20 low · 2 high
Population ID (name)factor350Neutrophils62,314CD4+CD8-29,771CD8+CD4-10,404Monocytes10,099CD56dim5,922Mature SIg Kappa3,195+29 more
Neutrophils62,314CD4+CD8-29,771CD8+CD4-10,404Monocytes10,099CD56dim5,922Mature SIg Kappa3,195+29 more
Levels
35
Used
35
Rows per level
Neutrophils62,314CD4+CD8-29,771CD8+CD4-10,404Monocytes10,099CD56dim5,922Mature SIg Kappa3,195debris RBC2,946Eosinophils2,744doublets neutrophils1,945Monocytoid DC1,747CD4+CD8dim1,731Mature SIg Lambda1,727TCRgd+1,110debris neutrophils904debris axis673other type of Debris669Basophils628debris T cells377doublets monocytes341doublets T cells217Plasmocytoid DC202other type of Doublets197debris monocytes194debris B cells167TCRgd-91CD4+CD8+90doublets eosinophils90debris NK cells63Myeloid DC57CD56bright48debris eosinophils38Other nucleated cells23doublets axis15PLASMA CELLS7doublets B cells6
Same structure in 31 other datasets
These datasets share the same columns and types but hold different data.
optimalFlowDataCytometry1optimalFlowDataCytometry10optimalFlowDataCytometry11optimalFlowDataCytometry12optimalFlowDataCytometry13optimalFlowDataCytometry22optimalFlowDataCytometry23optimalFlowDataCytometry24optimalFlowDataCytometry25optimalFlowDataCytometry26optimalFlowDataCytometry27optimalFlowDataCytometry28optimalFlowDataCytometry29optimalFlowDataCytometry3optimalFlowDataCytometry30optimalFlowDataCytometry31optimalFlowDataCytometry32optimalFlowDataCytometry33optimalFlowDataCytometry34optimalFlowDataCytometry35optimalFlowDataCytometry36optimalFlowDataCytometry37optimalFlowDataCytometry38optimalFlowDataCytometry39optimalFlowDataCytometry4optimalFlowDataCytometry40optimalFlowDataCytometry5optimalFlowDataCytometry6optimalFlowDataCytometry7optimalFlowDataCytometry8optimalFlowDataCytometry9
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.22 | 2025-10-29 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.21 | 2025-04-15 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.20 | 2024-10-29 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.19 | 2024-04-30 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.18 | 2023-10-24 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.17 | 2023-04-25 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.16 | 2022-11-01 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.15 | 2022-04-26 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.14 | 2021-10-26 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.13 | 2021-05-19 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.12 | 2020-10-27 | 140,752 × 11 | Unchanged | rda · bzip2 version 3 · 1.9 MB | exact |
| 3.11 | 2020-04-27 | 140,752 × 11 | – | rda · bzip2 version 3 · 1.9 MB | exact |