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coda

Output Analysis and Diagnostics for MCMC

v0.19-4.1 · Jan 31, 2024 · GPL (>= 2)
CRAN GitHub Mirror

Description

Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

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r-devel-macos-arm64 OK
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r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Martyn Plummer <martyn.plummer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Martyn Plummer <martyn.plummer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Martyn Plummer <martyn.plummer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Martyn Plummer <martyn.plummer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Reverse Dependencies (434)

depends

BAYSTAR BMAmevt BSPADATA BayLum BayesARIMAX BayesFactor BayesLCA BayesTwin DPP EpiILM FME HelpersMG Hmsc InSilicoVA MCMC.qpcr MCMCglmm MCMCpack MCMCtreeR MasterBayes PICBayes R2WinBUGS RGE Ultimixt adaptMCMC anominate bamlss bayesDccGarch bayesSurv bayou bhm bhpm bkmrhat blatent boral bvartools c212 coalescentMCMC cplm cubfits dclone elrm endorse gconsensus gemtc icenReg lira mcgibbsit metropolis multiocc pexm phase1PRMD phase1RMD popReconstruct ramps relevent rjags spNNGP spsurv zoib

imports

ASMbook AuxSurvey BAMBI BCClong BCHM BDWreg BEND BFpack BGVAR BNPmix BNSP BSL BSTFA BSTZINB BTIME BTSPAS BayesBEKK BayesBinMix BayesCACE BayesChange BayesDissolution BayesFM BayesGWQS BayesLN BayesMFSurv BayesMoFo BayesPostEst BayesRS BayesSIM BayesTools BayesX BayesianTools Bayesrel Bchron Bergm BiDAG BiostatsUHNplus CARBayes CARBayesST COMIX DBR DGP4LCF DPTM DrBats EMC2 EcoDiet EpiEstim EpiLPS EpiModel EvidenceSynthesis FAVAR HLSM IRTM ISEtools JMbayes2 JointAI LAWBL LDATS LearnBayes MCMCvis MJMbamlss MPTmultiverse MSGARCH MetaLandSim MetaStan MethComp MfUSampler MigConnectivity MixSIAR MplusAutomation MultiNMix NMADTA NPBayesImputeCat NobBS PINstimation PLMIX PVAClone PhaseType R2MLwiN R2OpenBUGS R2admb R2jags RMark RcmdrPlugin.RMTCJags RoBMA RoBSA Romeb Rtwalk SAME SeqFeatR SimBIID TreeBUGS UPG XDNUTS Xcertainty ZIHINAR1 adaptsmoFMRI adsoRptionMCMC agRee aggreCAT aihuman altmeta ameras ammiBayes aphylo apollo arm auRoc autoMR baclava baker bamp baorista bartcs bayesCureRateModel bayesGARCH bayesLife bayesMRM bayesMig bayesPO bayesTFR bayescount bayeslm bayesmix bayesmsm bayesvl bcf bclogit bfw bgms bgsmtr bgumbel bipd blapsr blavaan bmco bml bnma bplsr bpr bridgesampling brms brokenstick broom.mixed bsam bspcov bssm btergm catalytic cobin cogirt compareMCMCs crossnma ctmcd dRiftDM dcmle deBInfer deepSTRAPP diagis dlmtree dmbc dreamer dsp eSIR easybgm eefAnalytics eggCounts eiPack emdbook epts ergm ern evolqg evolvability ewoc exdqlm fabMix factor.switching fdasrvf fkbma fmcmc geiger genMCMCDiag geoBayes ggdmc hSDM hbsaems hdpGLM iglm immer invitroTKstats ivd ivdoctr jSDM jagsUI jagstargets krige latentnet lcra linelistBayes list lsirm12pl marked mcmcr mcp mdmb metaBMA midas2 missingHE mixAK morse morseDR msaeHB mtarm multibridge multimark multinomialLogitMix multinomineq nLTT neojags nimble nimbleCarbon nimblewomble nlist nse optimalThreshold ordinalbayes pcnetmeta phytools plotMCMC pmwg polySegratioMM pomp pompp postpack prevalence ptycho qgg qrjoint r4ss ratematrix rbacon ref.ICAR remiod rjuliabugs rnmamod rpm rr rtmpt runMCMCbtadjust runjags rwty saeHB saeHB.ME saeHB.ME.beta saeHB.ZIB saeHB.panel saeHB.panel.beta saeHB.spatial saeHB.twofold saeHB.unit sbde scape season shrinkDSM shrinkTVP shrinkTVPVAR simlandr slfm sns spAbundance spBayes spBayesSurv spOccupancy spTDyn spTimer sparsereg sparsesurv spatialAtomizeR spatialreg sphet spikeSlabGAM sspse statnet.common stocc stochvol superdiag tbea tergm tidybayes tidytreatment trialr unmconf voigt walker wv yuima zic

suggests

AHMbook AdMit ArchaeoPhases BGGE BVAR BaM ContRespPP HDInterval LAM LNIRT Luminescence MBNMAdose QAEnsemble R2BayesX SALTSampler SIBER TAM afdx airGR amen babelmixr2 bayesImageS bayesanova bayesianVARs bayest bmstdr brea broom bsreg camtrapR countSTAR dsge embryogrowth emmeans ergmito factorstochvol gap ggmcmc glmmTMB glmmfields handwriter icensBKL lmls mcmcderive mcmcensemble mcmcsae metamisc miceadds modelbased mvgam nimbleAPT nimbleNoBounds nimbleSCR nmathresh noisyCE2 outbreaker2 parameters pscl purgeR rFIA rater rbi redist rstan shinystan simpleMH sirt snSMART spCP surveillance swfscMisc systemicrisk texreg topolow vibass womblR zoo

Dependency Network

Dependencies Reverse dependencies lattice BAYSTAR BMAmevt BSPADATA BayLum BayesARIMAX BayesFactor BayesLCA BayesTwin DPP EpiILM FME HelpersMG Hmsc InSilicoVA MCMC.qpcr +419 more reverse deps coda

Version History

new 0.19-4.1 Mar 10, 2026
updated 0.19-4.1 ← 0.19-4 diff Jan 30, 2024
updated 0.19-4 ← 0.19-3 diff Sep 29, 2020
updated 0.19-3 ← 0.19-2 diff Jul 4, 2019
updated 0.19-2 ← 0.19-1 diff Oct 7, 2018
updated 0.19-1 ← 0.18-1 diff Dec 7, 2016
updated 0.18-1 ← 0.17-1 diff Oct 15, 2015
updated 0.17-1 ← 0.16-1 diff Mar 2, 2015
updated 0.16-1 ← 0.15-2 diff Nov 5, 2012
updated 0.15-2 ← 0.15-1 diff Jul 23, 2012
updated 0.15-1 ← 0.14-7 diff Jul 16, 2012
updated 0.14-7 ← 0.14-6 diff Apr 1, 2012
updated 0.14-6 ← 0.14-5 diff Nov 3, 2011
updated 0.14-5 ← 0.14-4 diff Nov 2, 2011
updated 0.14-4 ← 0.14-2 diff May 19, 2011
updated 0.14-2 ← 0.13-5 diff Dec 8, 2010
updated 0.13-5 ← 0.13-4 diff Mar 18, 2010
updated 0.13-4 ← 0.13-3 diff Jan 25, 2009
updated 0.13-3 ← 0.13-2 diff Sep 9, 2008
updated 0.13-2 ← 0.13-1 diff May 15, 2008