RMark

R Code for Mark Analysis

v3.0.8 · Jun 13, 2026 · GPL (>= 2)

Description

An interface to the software package MARK that constructs input files for MARK and extracts the output. MARK was developed by Gary White and is freely available at <http://www.phidot.org/software/mark/downloads/> but is not open source.

Downloads

CRAN

1.4K

Last 30 days

3134th

29K

Last 90 days

81K

Last year

Trend: -74.4% (30d vs prior 30d)

r2u CRAN

Last 30 days

Last 90 days

137

Last year

Trend: -30% (30d vs prior 30d)

CRAN Check Status

4 ERROR

9 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	165.8s
r-devel-linux-x86_64-debian-gcc	OK	117.9s
r-devel-linux-x86_64-fedora-clang	OK	289.6s
r-devel-linux-x86_64-fedora-gcc	OK	268.8s
r-devel-windows-x86_64	OK	213s
r-oldrel-macos-arm64	ERROR	42s
r-oldrel-macos-x86_64	ERROR	120s
r-oldrel-windows-x86_64	OK	244s
r-patched-linux-x86_64	OK	149s
r-release-linux-x86_64	OK
r-release-macos-arm64	ERROR	38s
r-release-macos-x86_64	ERROR	125s
r-release-windows-x86_64	OK	229s

Check details (4 non-OK)

ERROR r-oldrel-macos-arm64

examples

Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:

> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed.  They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric.  The real parameters will remain 
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ #  Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ #  Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=
...[truncated]...
able to find or run mark.exe


S.dot

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.min

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.time

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


No mark models found

Error in collect.models() : 
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted

ERROR r-oldrel-macos-x86_64

examples

Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:

> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed.  They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric.  The real parameters will remain 
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ #  Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ #  Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=
...[truncated]...
able to find or run mark.exe


S.dot

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.min

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.time

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


No mark models found

Error in collect.models() : 
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted

ERROR r-release-macos-arm64

examples

Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:

> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed.  They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric.  The real parameters will remain 
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ #  Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ #  Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=
...[truncated]...
able to find or run mark.exe


S.dot

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.min

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.time

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


No mark models found

Error in collect.models() : 
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted

ERROR r-release-macos-x86_64

examples

Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:

> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed.  They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric.  The real parameters will remain 
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ #  Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ #  Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=
...[truncated]...
able to find or run mark.exe


S.dot

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.min

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


S.time

sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile,  :
  error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust,  : 
  
Output file does not exist. Unable to find or run mark.exe


No mark models found

Error in collect.models() : 
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted