Skip to content

marked

Mark-Recapture Analysis for Survival and Abundance Estimation

v1.2.8 · Oct 19, 2023 · GPL (>= 2)

Description

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Downloads

694

Last 30 days

5344th

2.2K

Last 90 days

10.8K

Last year

Trend: -22.4% (30d vs prior 30d)

CRAN Check Status

2 NOTE
12 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                      email = "jefflaake@gmail.com"),
               person(given = "Devin",
                      family = "Johnson",
                      role = "aut",
                      email = "devin.johnson@noaa.gov"),
               person(given = "Paul",
                      family = "Conn",
                      role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                      email = "jefflaake@gmail.com"),
               person(given = "Devin",
                      family = "Johnson",
                      role = "aut",
                      email = "devin.johnson@noaa.gov"),
               person(given = "Paul",
                      family = "Conn",
                      role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                 
...[truncated]...
               role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jeff Laake <jefflaake@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Laake",
                      role = c("aut", "cre"),
                 
...[truncated]...
               role = "aut",
                      email = "paul.conn@noaa.gov"),
               person(given = c("example", "for", "simHMM", "from", "Jay"),
                      family = "Rotella",
                      role = "aut"))
as necessary.

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies lme4 R2admb truncnorm coda Matrix numDeriv expm Rcpp TMB optimx data.table knitr kableExtra bookdown RWildbook marked

Version History

new 1.2.8 Mar 10, 2026
updated 1.2.8 ← 1.2.6 diff Oct 18, 2023
updated 1.2.6 ← 1.2.1 diff Dec 8, 2019
updated 1.2.1 ← 1.1.13 diff Mar 29, 2018
updated 1.1.13 ← 1.1.11 diff Dec 5, 2016
updated 1.1.11 ← 1.1.9 diff Mar 6, 2016
updated 1.1.10 ← 1.1.8 diff Aug 19, 2015
updated 1.1.9 ← 1.1.10 diff Aug 19, 2015
updated 1.1.8 ← 1.1.6 diff Mar 16, 2015
updated 1.1.6 ← 1.1.3 diff Jun 16, 2014
updated 1.1.3 ← 1.1.2 diff Nov 22, 2013
updated 1.1.2 ← 1.0.9 diff Aug 15, 2013
new 1.0.9 Jan 24, 2013