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SimBIID

Simulation-Based Inference Methods for Infectious Disease Models

v0.2.2 · Apr 3, 2025 · GPL (>= 3)
CRAN GitHub Mirror

Description

Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) <doi:10.1098/rsif.2008.0172> and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 <doi:10.1111/j.1467-9868.2009.00736.x>). Also provides functions to plot and summarise the outputs.

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14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies dplyr purrr tibble ggplot2 tidyr mvtnorm RColorBrewer Rcpp RcppXPtrUtils coda SimBIID

Version History

new 0.2.2 Mar 10, 2026
updated 0.2.2 ← 0.2.1 diff Apr 2, 2025
updated 0.2.1 ← 0.2.0 diff Feb 3, 2021
updated 0.2.0 ← 0.1.4 diff May 19, 2020
updated 0.1.4 ← 0.1.3 diff Mar 2, 2020
updated 0.1.3 ← 0.1.2 diff Nov 20, 2019
updated 0.1.2 ← 0.1.1 diff Sep 18, 2019
updated 0.1.1 ← 0.1.0 diff Aug 24, 2019
new 0.1.0 Aug 22, 2019