geiger

Analysis of Evolutionary Diversification

v2.0.11 · Apr 3, 2023 · GPL (>= 2)

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Description

Methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

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14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	173.1s
r-devel-linux-x86_64-debian-gcc	NOTE	122.1s
r-devel-linux-x86_64-fedora-clang	NOTE	271.8s
r-devel-linux-x86_64-fedora-gcc	NOTE	272.8s
r-devel-macos-arm64	NOTE	38s
r-devel-windows-x86_64	NOTE	220s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	116s
r-oldrel-windows-x86_64	NOTE	247s
r-patched-linux-x86_64	NOTE	171.3s
r-release-linux-x86_64	NOTE	162.3s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	158s
r-release-windows-x86_64	NOTE	192s

Check details (16 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                      email = "lukeh@uidaho.edu"),
               person(given = "Matthew",
                      family = "Pennell",
                      role = "aut"),
               person(given = "Chad",
                      family = "Brock",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Brown",
                      role = "aut"),
               person(given = "Wendell",
                      family = "Challenger",
                      role = "aut"),
               person(given = "Jon",
                      family = "Eastman",
                      role = "aut"),
               person(given = "Rich",
                      family = "FitzJohn",
                      role = "aut"),
               person(given = "Rich",
                      family = "Glor",
                      role = "aut"),
               person(given = "Gene",
                      family = "Hunt",
                      role = "aut"),
               person(given = "Liam",
                      family = "Revell",
                      role = "aut"),
               person(given = "Graham",
                      family = "Slater",
                      role = "aut"),
               person(given = "Josef",
                      family = "Uyeda",
                      role = "aut"),
               person(given = "Jason",
                      family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
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(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                      email = "lukeh@uidaho.edu"),
               person(given = "Matthew",
                      family = "Pennell",
                      role = "aut"),
               person(given = "Chad",
                      family = "Brock",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Brown",
                      role = "aut"),
               person(given = "Wendell",
                      family = "Challenger",
                      role = "aut"),
               person(given = "Jon",
                      family = "Eastman",
                      role = "aut"),
               person(given = "Rich",
                      family = "FitzJohn",
                      role = "aut"),
               person(given = "Rich",
                      family = "Glor",
                      role = "aut"),
               person(given = "Gene",
                      family = "Hunt",
                      role = "aut"),
               person(given = "Liam",
                      family = "Revell",
                      role = "aut"),
               person(given = "Graham",
                      family = "Slater",
                      role = "aut"),
               person(given = "Josef",
                      family = "Uyeda",
                      role = "aut"),
               person(given = "Jason",
                      family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
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...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
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(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
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(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
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(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
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(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dtt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dtt.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitContinuous.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuou
...[truncated]...
(-1) fitContinuous.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitContinuous.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                  
...[truncated]...
              family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Luke Harmon <lukeh@uidaho.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Harmon",
                      role = c("aut", "cre"),
                  
...[truncated]...
              family = "Weir",
                      role = "aut"),
               person(given = "CRAN",
                      family = "team",
                      role = "aut",
                      comment = "corrections in 2022"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) bd.ms.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bd.ms.Rd:49-50: Lost braces in \itemize; \value handles \item{}{
...[truncated]...
eant \describe ?
checkRd: (-1) fitDiscrete.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitDiscrete.Rd:67: Lost braces in \itemize; meant \describe ?

Reverse Dependencies (28)

depends

OUwie TreeSim bayou convevol surface windex

imports

FishPhyloMaker PNC deepSTRAPP hillR hisse markophylo nichevol nodeSub pmc ppgm ratematrix secsse sensiPhy treats treedata.table

suggests

RNeXML cauphy diversitree fishtree pcmabc phytools treestats

Dependency Network

Version History

new 2.0.11 Mar 10, 2026

updated 2.0.11 ← 2.0.10 diff Apr 2, 2023

updated 2.0.10 ← 2.0.9 diff Jun 2, 2022

updated 2.0.9 ← 2.0.7.1 diff May 11, 2022

updated 2.0.7.1 ← 2.0.7 diff May 8, 2022

updated 2.0.7 ← 2.0.6.4 diff Jun 1, 2020

updated 2.0.6.4 ← 2.0.6.3 diff Jan 24, 2020

updated 2.0.6.3 ← 2.0.6.2 diff Jan 22, 2020

updated 2.0.6.2 ← 2.0.6.1 diff Jun 3, 2019

updated 2.0.6.1 ← 2.0.6 diff Jan 15, 2019

updated 2.0.6 ← 2.0.5 diff Sep 6, 2015

updated 2.0.5 ← 2.0.3 diff Sep 2, 2015

updated 2.0.3 ← 2.0.1 diff May 15, 2014

updated 2.0.1 ← 2.0 diff Mar 6, 2014

updated 2.0 ← 1.99-3.1 diff Feb 9, 2014

updated 1.99-3.1 ← 1.99-3 diff Nov 13, 2013

updated 1.99-3 ← 1.99-2 diff Apr 11, 2013

updated 1.99-2 ← 1.3-1 diff Apr 5, 2013

updated 1.3-1 ← 1.2-14 diff Oct 19, 2009

updated 1.2-14 ← 1.2-13 diff Nov 20, 2008

Maintainer

Luke Harmon

Dependencies

Depends

ape (>= 3.0-6) R (>= 2.15.0) phytools (>= 1.5-1)

Imports

MASS mvtnorm subplex deSolve (>= 1.7) digest Rcpp (>= 0.11.0) coda ncbit colorspace methods

Suggests

TreeSim

Compilation

Needs compilation

First Published

Apr 25, 2007

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