LDATS

Latent Dirichlet Allocation Coupled with Time Series Analyses

v0.3.0 · Sep 19, 2023 · MIT + file LICENSE

Description

Combines Latent Dirichlet Allocation (LDA) and Bayesian multinomial time series methods in a two-stage analysis to quantify dynamics in high-dimensional temporal data. LDA decomposes multivariate data into lower-dimension latent groupings, whose relative proportions are modeled using generalized Bayesian time series models that include abrupt changepoints and smooth dynamics. The methods are described in Blei et al. (2003) <doi:10.1162/jmlr.2003.3.4-5.993>, Western and Kleykamp (2004) <doi:10.1093/pan/mph023>, Venables and Ripley (2002, ISBN-13:978-0387954578), and Christensen et al. (2018) <doi:10.1002/ecy.2373>.

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14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	163.8s
r-devel-linux-x86_64-debian-gcc	NOTE	114.9s
r-devel-linux-x86_64-fedora-clang	NOTE	244.7s
r-devel-linux-x86_64-fedora-gcc	NOTE	256s
r-devel-macos-arm64	NOTE	43s
r-devel-windows-x86_64	NOTE	201s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	111s
r-oldrel-windows-x86_64	NOTE	236s
r-patched-linux-x86_64	NOTE	155.7s
r-release-linux-x86_64	NOTE	147.3s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	144s
r-release-windows-x86_64	NOTE	194s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-debian-gcc

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NOTE r-devel-linux-x86_64-fedora-clang

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    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-linux-x86_64-fedora-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-devel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-devel-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-oldrel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-oldrel-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-patched-linux-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-release-linux-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-release-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-release-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-devel-linux-x86_64-debian-gcc

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-devel-linux-x86_64-fedora-clang

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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NOTE r-devel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-release-linux-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
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NOTE r-release-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-release-windows-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-macos-arm64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-macos-x86_64

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checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
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Reverse Dependencies (1)

imports

argminCS

Dependency Network

Version History

new 0.3.0 Mar 10, 2026

updated 0.3.0 ← 0.2.7 diff Sep 18, 2023

updated 0.2.7 ← 0.2.6 diff Mar 18, 2020

updated 0.2.6 ← 0.2.4 diff Mar 2, 2020

new 0.2.4 Jul 31, 2019

Maintainer

Juniper L. Simonis

Dependencies

Depends

R (>= 3.5.0)

Imports

coda digest extraDistr graphics grDevices lubridate magrittr memoise methods mvtnorm nnet progress stats topicmodels viridis

Suggests

knitr pkgdown rmarkdown testthat vdiffr

Compilation

No compilation needed

First Published

Jul 31, 2019

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