R Observatory: Metrics for rwty version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

rwty

1.0.3Package record

R We There Yet? Visualizing MCMC Convergence in Phylogenetics

0packages depend

3.3Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Dan WarrenCRAN page ↗

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), doi:10.1093/molbev/msw279.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("rwty", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rwty

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rwty

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rwty

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 11.2 min · r-release-macos-x86_64

Status changes

OK13 OK2026-09-09
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-17
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.3

READMEYes · 2,786 wordsVignettesNoNEWSNoCitation fileYes · computed when R runs itWebsitenot declared in DESCRIPTION

Help pages: 32
Examples that run: 7%2 run in a plain check · 24 never run · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 9%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #10,711 · ~9/day · ~274/mo

Releases R versions

Daily download trend is not available in this view yet.

35730 days

96290 days

3.3K1 year

Compare downloads with other packages →

Also on107 r2u11 autocran

How downloads are counted

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing rwty adds 79 packages (42 with compiled code, 76 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (3)

R >= 3.3.0ape ggplot2

Imports (10)

reshape2 phangorn coda viridisgridplyr ggdendro GGallyparallelTreeDist

LinkingTo (0)

none

Suggests (5)

knitr testthat markdown rmarkdown stringi

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (10)

Dan Warren

Author, Maintainer since 1.0.0 (2016)

Anthony Geneva

Author

Rob Lanfear

Author

Luke Harmon

Contributor · added in 1.0.2

Kelly Luke

Contributor · added in 1.0.3

Diego Mallo

Contributor · added in 1.0.2

Smith Martin

Contributor · added in 1.0.3

Kendall Michelle

Contributor · added in 1.0.3

Klaus Schliep

Contributor · added in 1.0.2

April Wright

Contributor · added in 1.0.2

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.3Latest
record
2025-03-27 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0.2
record
2019-02-15 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0.1
record
2016-06-22 · diff ↗
1.0.0
record
2016-06-11
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-06-11
Total releases: 4 / 10 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.3.0
Bundled data: 2.9 MB / 3 files
Download size: 2.9 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rwty")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rwty version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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