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rwty

R We There Yet? Visualizing MCMC Convergence in Phylogenetics

v1.0.3 · Mar 27, 2025 · GPL-2

Description

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies ape ggplot2 reshape2 phangorn coda viridis plyr ggdendro GGally TreeDist rwty

Version History

new 1.0.3 Mar 10, 2026
updated 1.0.3 ← 1.0.2 diff Mar 26, 2025
updated 1.0.2 ← 1.0.1 diff Feb 14, 2019
updated 1.0.1 ← 1.0.0 diff Jun 21, 2016
new 1.0.0 Jun 10, 2016