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EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

v2.2-5 · Jun 27, 2025 · GPL (>= 2)
CRAN GitHub Mirror

Description

Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.

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CRAN Check Status

14 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (6)

imports

EpiLPS ViroReportR covid19india earlyR ern

suggests

projections

Dependency Network

Dependencies Reverse dependencies coarseDataTools reshape2 ggplot2 gridExtra fitdistrplus coda incidence scales EpiLPS ViroReportR covid19india earlyR ern projections EpiEstim

Version History

new 2.2-5 Mar 10, 2026
updated 2.2-5 ← 2.2-4.1 diff Jun 26, 2025
updated 2.2-4.1 ← 2.2-4 diff Jun 22, 2025
updated 2.2-4 ← 2.2-3 diff Jan 6, 2021
updated 2.2-3 ← 2.2-1 diff May 28, 2020
updated 2.2-1 ← 1.1-2 diff Jul 7, 2019
updated 1.1-2 ← 1.1-1 diff Mar 7, 2013
updated 1.1-1 ← 1.1-0 diff Feb 28, 2013
updated 1.1-0 ← 1.0-0 diff Feb 18, 2013
new 1.0-0 Jun 6, 2012