spBayesSurv

1.1.9

Bayesian Modeling and Analysis of Spatially Correlated Survival Data

0packages depend

6.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Haiming ZhouFirst published 2014-06-1217 releasesCRAN page ↗

Provides several Bayesian survival models for spatial/non-spatial survival data: proportional hazards (PH), accelerated failure time (AFT), proportional odds (PO), and accelerated hazards (AH), a super model that includes PH, AFT, PO and AH as special cases, Bayesian nonparametric nonproportional hazards (LDDPM), generalized accelerated failure time (GAFT), and spatially smoothed Polya tree density estimation. The spatial dependence is modeled via frailties under PH, AFT, PO, AH and GAFT, and via copulas under LDDPM and PH. Model choice is carried out via the logarithm of the pseudo marginal likelihood (LPML), the deviance information criterion (DIC), and the Watanabe-Akaike information criterion (WAIC). See Zhou, Hanson and Zhang (2020) doi:10.18637/jss.v092.i09.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("spBayesSurv", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-spbayessurv

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-spBayesSurv

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-spBayesSurv

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 11.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Check history

OK2026-06-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 75%

Downloads

6.1K

CRAN downloads in the past year

Rank #9,305 · ~17/day · ~507/mo

Releases R versions

Daily download trend is not available in this view yet.

34830 days

1.2K90 days

6.1K1 year

Compare downloads with other packages →

Also on472 r2u29 autocran80 c2d4u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (7)

RcppsurvivalcodamethodsMASSfieldssplines

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 11,939 (59%)R 5,283 (26%)Rd 2,313 (11%)C 649 (3%)

Code characteristics

Object systems

S332

Cyclomatic complexity: 4.0 median / 122 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

230 0 exported

Complexity

15.6 avg / 122 max

Call network

230 nodes / 291 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
LeukSurv	data.frame	1,043 × 9	in 2 packages

People & History

People (2)

Maintainer (1)

Haiming Zhou

Author, Maintainer, Copyright holder

Authors (2)

Haiming Zhou

Author, Maintainer, Copyright holder

Timothy Hanson

Author · added in 1.1.2

Haiming Zhou

Author, Maintainer, Copyright holder

Listed in earlier versions (1)

Tim Hanson

no longer listed · 1.0.0 to 1.1.1

Package Timeline

17 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.9Latest
2025-07-23 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1.8
2024-02-23 · diff ↗
1.1.7
2023-05-17 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.6
2022-05-15 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.5
2021-01-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.1.4
2020-02-23 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1.3
2018-04-23 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 14 earlier events

1.1.2
2018-01-11 · diff ↗
1.1.1
2017-05-15 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.1.0
2017-03-31 · diff ↗
1.0.6
2016-12-14 · diff ↗
1.0.5
2016-10-10 · diff ↗
1.0.4
2016-08-17 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.0.3
2015-09-01 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.0.2
2014-12-19 · diff ↗
1.0.1
2014-10-25 · diff ↗
1.0.0
2014-06-12
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-12
Total releases: 17 / 12 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0.0
Bundled data: 17 KB / 1 file
Download size: 224 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Analysis of Spatial Data Survival Analysis

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