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CARBayesST

Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data

v4.0 · Oct 30, 2023 · GPL (>= 2)

Description

Implements a class of univariate and multivariate spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, including models similar to Rushworth et al. (2014) <doi:10.1016/j.sste.2014.05.001>. Full details are given in the vignette accompanying this package. The creation and development of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grants EP/J017442/1 and EP/T004878/1 and the Medical Research Council (MRC) grant MR/L022184/1.

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CRAN Check Status

6 NOTE
8 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (8 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "duncan.lee@glasgow.ac.uk"),
               person(given = "Alastair",
                      family = "Rushworth",
                      role = "aut"),
               person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘CARBayesST/libs/CARBayesST.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "duncan.lee@glasgow.ac.uk"),
               person(given = "Alastair",
                      family = "Rushworth",
                      role = "aut"),
               person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘CARBayesST/libs/CARBayesST.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-windows-x86_64

compiled code

File 'CARBayesST/libs/x64/CARBayesST.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  8.1Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   5.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   5.9Mb
NOTE r-patched-linux-x86_64

compiled code

File ‘CARBayesST/libs/CARBayesST.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
            
...[truncated]...
             person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
            
...[truncated]...
             person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  8.1Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    libs   5.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs   5.9Mb

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies MASS Rcpp CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet matrixStats MCMCpack sf spam spdep +2 more dependencies bmstdr CARBayesST

Version History

new 4.0 Mar 10, 2026
updated 4.0 ← 3.3.1 diff Oct 29, 2023
updated 3.3.1 ← 3.3 diff Jan 16, 2023
updated 3.3 ← 3.2.3 diff May 11, 2022
updated 3.2.3 ← 3.2.2 diff Apr 25, 2022
updated 3.2.2 ← 3.2.1 diff Mar 15, 2022
updated 3.2.1 ← 3.2 diff May 30, 2021
updated 3.2 ← 3.1.1 diff Mar 30, 2021
updated 3.1.1 ← 3.1 diff Feb 3, 2021
updated 3.1 ← 3.0.2 diff Mar 8, 2020
updated 3.0.2 ← 3.0.1 diff Dec 11, 2019
updated 3.0.1 ← 3.0 diff Jan 7, 2019
updated 3.0 ← 2.5.2 diff Sep 26, 2018
updated 2.5.2 ← 2.5.1 diff Apr 16, 2018
updated 2.5.1 ← 2.5 diff Aug 13, 2017
updated 2.5 ← 2.4 diff Mar 15, 2017
updated 2.4 ← 2.3 diff Jul 27, 2016
updated 2.3 ← 2.2 diff Jun 14, 2016
updated 2.2 ← 2.1 diff Feb 24, 2016
updated 2.1 ← 2.0 diff Aug 25, 2015