purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

v1.8.2 · Nov 28, 2023 · GPL-2

Description

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load. In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included. See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.

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CRAN Check Status

4 NOTE

10 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	184.1s
r-devel-linux-x86_64-debian-gcc	NOTE	138.1s
r-devel-linux-x86_64-fedora-clang	OK	295.9s
r-devel-linux-x86_64-fedora-gcc	OK	353.3s
r-devel-macos-arm64	OK	45s
r-devel-windows-x86_64	NOTE	248s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	118s
r-oldrel-windows-x86_64	OK	298s
r-patched-linux-x86_64	NOTE	189.2s
r-release-linux-x86_64	OK	176.3s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	162s
r-release-windows-x86_64	OK	258s

Check details (4 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘purgeR/libs/purgeR.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘purgeR/libs/purgeR.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-windows-x86_64

compiled code

File 'purgeR/libs/x64/purgeR.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.

NOTE r-patched-linux-x86_64

compiled code

File ‘purgeR/libs/purgeR.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 27, 2026

NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘purgeR/libs/purgeR.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Version History

new 1.8.2 Mar 10, 2026

updated 1.8.2 ← 1.8 diff Nov 27, 2023

updated 1.8 ← 1.7 diff Aug 15, 2023

updated 1.7 ← 1.6 diff Dec 6, 2022

updated 1.6 ← 1.5 diff Nov 20, 2022

updated 1.5 ← 1.4 diff Jul 11, 2022

updated 1.4 ← 1.3 diff Dec 13, 2021

updated 1.3 ← 1.2 diff Aug 17, 2021

updated 1.2 ← 1.1 diff Jul 11, 2021

updated 1.1 ← 1.0 diff May 9, 2021

new 1.0 Apr 29, 2021