Description
An implementation of extended state-space SIR models developed by Song Lab at UM school of Public Health. There are several functions available by 1) including a time-varying transmission modifier, 2) adding a time-dependent quarantine compartment, 3) adding a time-dependent antibody-immunization compartment. Wang L. (2020) <doi:10.6339/JDS.202007_18(3).0003>.
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CRAN Check Status
14
NOTE
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (14 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) confirmed. ...[truncated]... s in \itemize; meant \describe ? checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?