lme4

compiled code

File ‘lme4/libs/lme4.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

compiled code

File ‘lme4/libs/lme4.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

re-building of vignette outputs

Note: skipping ‘lmer.Rnw’ due to unavailable dependencies: 'ggplot2'

compiled code

File 'lme4/libs/x64/lme4.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.

installed package size

installed size is 27.8Mb
  sub-directories of 1Mb or more:
    R          1.7Mb
    doc        1.7Mb
    libs      22.0Mb
    testdata   1.4Mb

installed package size

installed size is 28.2Mb
  sub-directories of 1Mb or more:
    R          1.7Mb
    doc        1.7Mb
    libs      22.5Mb
    testdata   1.4Mb

installed package size

installed size is  6.9Mb
  sub-directories of 1Mb or more:
    R          1.6Mb
    doc        1.7Mb
    libs       1.3Mb
    testdata   1.4Mb

compiled code

File ‘lme4/libs/lme4.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

tests

Running ‘AAAtest-all.R’ [146s/178s]
  Running ‘HSAURtrees.R’ [3s/3s]
  Running ‘REMLdev.R’ [3s/4s]
  Running ‘ST.R’ [3s/3s]
  Running ‘agridat_gotway.R’ [4s/5s]
  Running ‘bootMer.R’ [7s/16s]
  Running ‘boundary.R’ [17s/21s]
  Running ‘confint.R’ [5s/5s]
  Running ‘devCritFun.R’ [3s/3s]
  Running ‘drop.R’ [3s/5s]
  Running ‘drop1contrasts.R’ [3s/4s]
  Running ‘dynload.R’ [0s/0s]
  Running ‘elston.R’ [3s/4s]
  Running ‘evalCall.R’ [3s/4s]
  Running ‘extras.R’ [2s/3s]
  Running ‘falsezero_dorie.R’ [3s/3s]
  Running ‘fewlevels.R’ [0s/0s]
  Running ‘getME.R’ [3s/5s]
  Running ‘glmer-1.R’ [5s/6s]
  Running ‘glmerControlPass.R’ [5s/6s]
  Running ‘glmerWarn.R’ [4s/5s]
  Running ‘glmmExt.R’ [7s/9s]
  Running ‘glmmWeights.R’ [7s/10s]
  Running ‘hatvalues.R’ [3s/4s]
  Running ‘is.R’ [3s/4s]
  Running ‘lmList-tst.R’ [3s/4s]
  Running ‘lme4_nlme.R’ [3s/4s]
  Running ‘lmer-0.R’ [3s/4s]
  Running ‘lmer-1.R’ [3s/4s]
  Running ‘lmer-conv.R’ [3s/3s]
  Running ‘lmer2_ex.R’ [3s/3s]
  Running ‘methods.R’ 
...[truncated]...
rint(warnings()) # TODO? catch most of these by expect_warning(..)
  + } else {
  +     cat( "package 'testthat' not available, cannot run unit tests\n" )
  + }
  Saving _problems/test-resids-82.R
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ]
  
  ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-eval.R:2:1'
  • Skipping (1): 'test-covariance_nlmer.R:22:3'
  • empty test (3): , ,
  • getRversion() < "4.6.0" is TRUE (1): 'test-methods.R:899:3'
  • testLevel < 2 is TRUE (1): 'test-predict.R:689:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-resids.R:81:5'): weighted residuals ──────────────────────────
  Expected `head(weighted.residuals(gm1), 3)` to equal `structure(...)`.
  Differences:
  2/3 mismatches (average diff: 0.267)
  [2] -5.17 - -4.93 == -0.244
  [3] -5.65 - -5.35 == -0.291
  
  [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ]
  Error:
  ! Test failures.
  Execution halted

tests

Running 'AAAtest-all.R' [115s]
  Running 'HSAURtrees.R' [0s]
  Running 'REMLdev.R' [2s]
  Running 'ST.R' [2s]
  Running 'agridat_gotway.R' [0s]
  Running 'bootMer.R' [0s]
  Running 'boundary.R' [0s]
  Running 'confint.R' [2s]
  Running 'devCritFun.R' [0s]
  Running 'drop.R' [0s]
  Running 'drop1contrasts.R' [0s]
  Running 'dynload.R' [0s]
  Running 'elston.R' [0s]
  Running 'evalCall.R' [0s]
  Running 'extras.R' [2s]
  Running 'falsezero_dorie.R' [0s]
  Running 'fewlevels.R' [0s]
  Running 'getME.R' [0s]
  Running 'glmer-1.R' [2s]
  Running 'glmerControlPass.R' [0s]
  Running 'glmerWarn.R' [0s]
  Running 'glmmExt.R' [2s]
  Running 'glmmWeights.R' [0s]
  Running 'hatvalues.R' [0s]
  Running 'is.R' [0s]
  Running 'lmList-tst.R' [2s]
  Running 'lme4_nlme.R' [2s]
  Running 'lmer-0.R' [2s]
  Running 'lmer-1.R' [2s]
  Running 'lmer-conv.R' [2s]
  Running 'lmer2_ex.R' [2s]
  Running 'methods.R' [0s]
  Running 'minval.R' [2s]
  Running 'modFormula.R' [0s]
  Running 'nbinom.R' [0s]
  Running 'n
...[truncated]...
e by expect_warning(..)
  + } else {
  +     cat( "package 'testthat' not available, cannot run unit tests\n" )
  + }
  Saving _problems/test-resids-82.R
  [ FAIL 1 | WARN 0 | SKIP 8 | PASS 1763 ]
  
  ══ Skipped tests (8) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-eval.R:2:1'
  • On Windows (1): 'test-methods.R:345:3'
  • Skipping (1): 'test-covariance_nlmer.R:22:3'
  • empty test (3): , ,
  • getRversion() < "4.6.0" is TRUE (1): 'test-methods.R:899:3'
  • testLevel < 2 is TRUE (1): 'test-predict.R:689:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-resids.R:81:5'): weighted residuals ──────────────────────────
  Expected `head(weighted.residuals(gm1), 3)` to equal `structure(...)`.
  Differences:
  2/3 mismatches (average diff: 0.267)
  [2] -5.17 - -4.93 == -0.244
  [3] -5.65 - -5.35 == -0.291
  
  [ FAIL 1 | WARN 0 | SKIP 8 | PASS 1763 ]
  Error:
  ! Test failures.
  Execution halted