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WeightedCluster

Clustering of Weighted Data

v2.0 · Dec 10, 2025 · GPL (>= 2)
CRAN GitHub Mirror

Description

Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions, sequence analysis typology validation using parametric bootstraps and plotting (fuzzy) clusters of state sequences. It further provides a fuzzy and crisp CLARA algorithm to cluster large database with sequence analysis, and a methodological framework for Robustness Assessment of Regressions using Cluster Analysis Typologies (RARCAT).

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CRAN Check Status

2 WARNING
2 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 WARNING
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 WARNING
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (4 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
WARNING r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RARCAT.Rmd’

--- re-building ‘WeightedCluster.Rnw’ using knitr
2025-12-10 22:26:41.109 R[46130:372237] XType: Using static font registry.
--- finished re-building ‘WeightedCluster.Rnw’

--- re-building ‘WeightedClusterFR.Rnw’ using knitr
2025-12-10 22:26:55.145 R[58581:395409] XType: Using static font registry.
--- finished re-building ‘WeightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
Error: processing vignette 'WeightedClusterPreview.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'WeightedClusterPreview.tex' failed.
LaTeX errors:
! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.85 \usepackage
                {tikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted
WARNING r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-building ‘ClusterValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterValidSA.Rmd’

--- re-building ‘FuzzySA.Rmd’ using rmarkdown
--- finished re-building ‘FuzzySA.Rmd’

--- re-building ‘RARCAT.Rmd’ using rmarkdown
--- finished re-building ‘RARCAT.Rmd’

--- re-building ‘WeightedCluster.Rnw’ using knitr
2025-12-10 22:36:21.938 R[36700:819318] XType: Using static font registry.
--- finished re-building ‘WeightedCluster.Rnw’

--- re-building ‘WeightedClusterFR.Rnw’ using knitr
2025-12-10 22:36:34.553 R[39232:824797] XType: Using static font registry.
--- finished re-building ‘WeightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
Error: processing vignette 'WeightedClusterPreview.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'WeightedClusterPreview.tex' failed.
LaTeX errors:
! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.85 \usepackage
                {tikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted

Check History

WARNING 10 OK · 2 NOTE · 2 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
WARNING r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-bu
...[truncated]...
ikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted
WARNING r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-bu
...[truncated]...
ikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted
ERROR 9 OK · 2 NOTE · 2 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Matthias Studer <matthias.studer@unige.ch>’

Found the following (possibly) invalid URLs:
  URL: http:\www.graphviz.org
    From: inst/doc/WeightedClusterPreview.pdf
    Message: Invalid URL: missing authority part
ERROR r-devel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-bu
...[truncated]...
ightedClusterFR.Rnw’

--- re-building ‘WeightedClusterPreview.Rnw’ using knitr
--- finished re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘FuzzySA.Rmd’

Error: Vignette re-building failed.
Execution halted
WARNING r-release-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-bu
...[truncated]...
ikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted
WARNING r-oldrel-macos-arm64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘BigDataSA.Rmd’ using rmarkdown
--- finished re-building ‘BigDataSA.Rmd’

--- re-building ‘ClusterExternalValidSA.Rmd’ using rmarkdown
--- finished re-building ‘ClusterExternalValidSA.Rmd’

--- re-bu
...[truncated]...
ikz}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘WeightedClusterPreview.Rnw’

SUMMARY: processing the following file failed:
  ‘WeightedClusterPreview.Rnw’

Error: Vignette re-building failed.
Execution halted

Reverse Dependencies (6)

depends

ClusterStability

imports

MEDseq dTBM

suggests

SuperCell TraMineR seqhandbook

Dependency Network

Dependencies Reverse dependencies TraMineR cluster RColorBrewer foreach progressr future doFuture nnet fastcluster vegclust lme4 margins ClusterStability MEDseq dTBM SuperCell TraMineR seqhandbook WeightedCluster

Version History

new 2.0 Mar 10, 2026
updated 2.0 ← 1.8-1 diff Dec 9, 2025
updated 1.8-1 ← 1.8-0 diff Dec 9, 2024
updated 1.8-0 ← 1.6-4 diff Oct 1, 2024
updated 1.6-4 ← 1.6-2 diff Jul 6, 2023
updated 1.6-2 ← 1.6-0 diff May 16, 2023
updated 1.6-0 ← 1.4-1 diff Oct 4, 2021
updated 1.4-1 ← 1.4 diff Jul 5, 2020
updated 1.4 ← 1.2-1 diff Mar 20, 2019
updated 1.2-1 ← 1.2 diff Jun 19, 2017
updated 1.2 ← 1.0.1 diff Jan 18, 2014
updated 1.0.1 ← 1.0 diff Dec 20, 2013
new 1.0 Feb 28, 2013