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jlmerclusterperm

Cluster-Based Permutation Analysis for Densely Sampled Time Data

v1.1.4 · Jun 30, 2024 · MIT + file LICENSE
CRAN GitHub Mirror

Description

An implementation of fast cluster-based permutation analysis (CPA) for densely-sampled time data developed in Maris & Oostenveld, 2007 <doi:10.1016/j.jneumeth.2007.03.024>. Supports (generalized, mixed-effects) regression models for the calculation of timewise statistics. Provides both a wholesale and a piecemeal interface to the CPA procedure with an emphasis on interpretability and diagnostics. Integrates 'Julia' libraries 'MixedModels.jl' and 'GLM.jl' for performance improvements, with additional functionalities for interfacing with 'Julia' from 'R' powered by the 'JuliaConnectoR' package.

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CRAN Check Status

3 ERROR
11 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 ERROR
Check details (3 non-OK)
ERROR r-devel-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
> 
> ### ** Examples
> 
> ## Don't show: 
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted
ERROR r-oldrel-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
> 
> ### ** Examples
> 
> ## Don't show: 
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted
ERROR r-release-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_are_comparable
> 
> ### ** Examples
> 
> ## Don't show: 
> if (julia_setup_ok()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted

Check History

ERROR 11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
ERROR r-devel-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_a
...[truncated]...
on() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted
ERROR r-release-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_a
...[truncated]...
on() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted
ERROR r-oldrel-windows-x86_64

examples

Running examples in 'jlmerclusterperm-Ex.R' failed
The error most likely occurred in:

> ### Name: calculate_clusters_pvalues
> ### Title: Calculate bootstrapped p-values of cluster-mass statistics
> ### Aliases: calculate_clusters_pvalues clusters_a
...[truncated]...
on() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
Starting Julia ...
> ## End(Don't show)
> 
> 
> 
> cleanEx()
Error: connections left open:
	->localhost:11980 (sockconn)
Execution halted

Dependency Network

Dependencies Reverse dependencies backports cli generics JuliaConnectoR JuliaFormulae lme4 jlmerclusterperm

Version History

new 1.1.4 Mar 10, 2026
updated 1.1.4 ← 1.1.3 diff Jun 29, 2024
updated 1.1.3 ← 1.1.2 diff Mar 3, 2024
updated 1.1.2 ← 1.1.1 diff Feb 16, 2024
updated 1.1.1 ← 1.1.0 diff Feb 7, 2024
updated 1.1.0 ← 1.0.6 diff Oct 6, 2023
updated 1.0.6 ← 1.0.5 diff Sep 18, 2023
updated 1.0.5 ← 1.0.4 diff Sep 9, 2023
updated 1.0.4 ← 1.0.3 diff Sep 5, 2023
updated 1.0.3 ← 1.0.2 diff Jul 19, 2023
updated 1.0.2 ← 1.0.1 diff Jul 14, 2023
updated 1.0.1 ← 1.0.0 diff Jul 1, 2023
new 1.0.0 Jun 26, 2023