R Observatory: Metrics for jlmerclusterperm version 1.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

jlmerclusterperm

1.1.4

Cluster-Based Permutation Analysis for Densely Sampled Time Data

0packages depend

7.6Kdownloads / year

15.9%test coverage

10/13checks pass

Overview

About

Maintained by June ChoeFirst published 2023-06-2712 releasesCRAN page ↗GitHub ↗

An implementation of fast cluster-based permutation analysis (CPA) for densely-sampled time data developed in Maris & Oostenveld, 2007 doi:10.1016/j.jneumeth.2007.03.024. Supports (generalized, mixed-effects) regression models for the calculation of timewise statistics. Provides both a wholesale and a piecemeal interface to the CPA procedure with an emphasis on interpretability and diagnostics. Integrates 'Julia' libraries 'MixedModels.jl' and 'GLM.jl' for performance improvements, with additional functionalities for interfacing with 'Julia' from 'R' powered by the 'JuliaConnectoR' package.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("jlmerclusterperm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("yjunechoe/jlmerclusterperm")

Development version from yjunechoe/jlmerclusterperm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jlmerclusterperm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-jlmerclusterperm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-jlmerclusterperm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

3ERROR10OK

Failing flavors

ERROR r-devel-windows-x86_64
ERROR r-oldrel-windows-x86_64
ERROR r-release-windows-x86_64

Slowest check: 4.9 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.22

15.9%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

ERROR2026-03-10
11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE

Documentation

READMEYes · 487 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 94%
References docs: 0%

Downloads

7.6K

CRAN downloads in the past year

Rank #6,638 · ~21/day · ~630/mo

Releases R versions

Daily download trend is not available in this view yet.

24730 days

1.2K90 days

7.6K1 year

Compare downloads with other packages →

Also on112 r2u31 autocran

Repository

GitHub ↗ yjunechoe/jlmerclusterperm

14Stars

1Forks

5Open issues

1Open PRs

14Releases

524Commits

1Contributors

cluster-based-permutation-testtimeseriesmixed-effects-modelseegeyetracking

524 commits · Last activity 2025-03-10 · 0% stars, 30d

Stars over time

2025-06-09 · 132026-07-07 · 14

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/yjunechoe/jlmerclusterperm on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Research and citation (1)

codemeta.json

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (9)

backports cli generics JuliaConnectoR JuliaFormulae lme4statstoolsutils

LinkingTo (0)

none

Suggests (16)

broom broom.mixed covr dplyr eyetrackingR forcats future ggplot2 knitrMASSpatchwork readr rmarkdown scales testthat tibble

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

June Choe

Author, Maintainer, Copyright holder

Authors (1)

June Choe

Author, Maintainer, Copyright holder

Copyright holders (1)

June Choe

Author, Maintainer, Copyright holder

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.4Latest
2024-06-30 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.3
2024-03-04 · diff ↗
unarchivedReturned to CRAN
2024-03-04
archivedRemoved from CRAN
2024-02-29
policy violation Does not clean up use of cache
1.1.2
2024-02-17 · diff ↗
1.1.1
2024-02-08 · diff ↗
1.1.0
2023-10-07 · diff ↗
1.0.6
2023-09-19 · diff ↗
1.0.5
2023-09-10 · diff ↗
1.0.4
2023-09-06 · diff ↗
1.0.3
2023-07-20 · diff ↗
1.0.2
2023-07-15 · diff ↗
1.0.1
2023-07-02 · diff ↗

Show 2 earlier events

1.0.0
2023-06-27
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-06-27
Total releases: 12 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Download size: 1.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("jlmerclusterperm")

Format

Choe, J. (2024). jlmerclusterperm: Cluster-Based Permutation Analysis for Densely Sampled Time Data (Version 1.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.jlmerclusterperm

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for jlmerclusterperm version 1.1.4 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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