glmmPen
High Dimensional Penalized Generalized Linear Mixed Models (pGLMM)
Description
Fits high dimensional penalized generalized linear mixed models using the Monte Carlo Expectation Conditional Minimization (MCECM) algorithm. The purpose of the package is to perform variable selection on both the fixed and random effects simultaneously for generalized linear mixed models. The package supports fitting of Binomial, Gaussian, and Poisson data with canonical links, and supports penalization using the MCP, SCAD, or LASSO penalties. The MCECM algorithm is described in Rashid et al. (2020) <doi:10.1080/01621459.2019.1671197>. The techniques used in the minimization portion of the procedure (the M-step) are derived from the procedures of the 'ncvreg' package (Breheny and Huang (2011) <doi:10.1214/10-AOAS388>) and 'grpreg' package (Breheny and Huang (2015) <doi:10.1007/s11222-013-9424-2>), with appropriate modifications to account for the estimation and penalization of the random effects. The 'ncvreg' and 'grpreg' packages also describe the MCP, SCAD, and LASSO penalties.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
Check History
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/glmmPen.Rcheck/00install.out' for details.
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used.
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
installed package size
installed size is 67.4Mb
sub-directories of 1Mb or more:
libs 66.2Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.