CLME

Constrained Inference for Linear Mixed Effects Models

v2.0-13 · Apr 5, 2026 · GPL-3

Description

Estimation and inference for linear models where some or all of the fixed-effects coefficients are subject to order restrictions. This package uses the robust residual bootstrap methodology for inference, and can handle some structure in the residual variance matrix.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	114.4s
r-devel-linux-x86_64-debian-gcc	NOTE	85.9s
r-devel-linux-x86_64-fedora-clang	NOTE	183.5s
r-devel-linux-x86_64-fedora-gcc	NOTE	171.6s
r-devel-macos-arm64	NOTE	30s
r-devel-windows-x86_64	NOTE	127s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	71s
r-oldrel-windows-x86_64	NOTE	162s
r-patched-linux-x86_64	NOTE	111.8s
r-release-linux-x86_64	NOTE	105.9s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	109s
r-release-windows-x86_64	NOTE	146s

Check details (16 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-clang

Rd files

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NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

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checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:57: Lost braces in \itemize; \value handles
...[truncated]...
ces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:57: Lost braces in \itemize; \value handles
...[truncated]...
ces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:57: Lost braces in \itemize; \value handles
...[truncated]...
ces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:57: Lost braces in \itemize; \value handles
...[truncated]...
ces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme_em.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) clme.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) clme.Rd:48: Lost braces in \itemize; \value handles \item{}{} dire
...[truncated]...
races in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) create.constraints.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly

Dependency Network

Version History

updated 2.0-13 ← 2.0-12 diff Apr 6, 2026

new 2.0-12 Mar 10, 2026

updated 2.0-12 ← 2.0-11 diff Jun 6, 2020

updated 2.0-11 ← 2.0-10 diff Feb 6, 2019

updated 2.0-10 ← 2.0-9 diff May 22, 2018

updated 2.0-9 ← 2.0-8 diff Jan 31, 2018

updated 2.0-8 ← 2.0-6 diff Dec 7, 2017

updated 2.0-6 ← 2.0-4 diff Nov 7, 2016

updated 2.0-4 ← 2.0-2 diff Jul 12, 2015

updated 2.0-2 ← 2.0-1 diff Jan 26, 2015

updated 2.0-1 ← 1.0-1 diff Dec 4, 2014

new 1.0-1 Oct 16, 2014

Maintainer

Casey M. Jelsema

Dependencies

Depends

R (>= 4.0.0) shiny lme4 MASS

Imports

nlme methods DT isotone stringr stats openxlsx graphics

Suggests

testthat nnet

Compilation

No compilation needed

First Published

Oct 16, 2014

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