Skip to content

pez

Phylogenetics for the Environmental Sciences

v1.2-5 · Aug 28, 2025 · GPL-3

Description

Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').

Downloads

2.4K

Last 30 days

2749th

6.9K

Last 90 days

19.4K

Last year

Trend: +4.5% (30d vs prior 30d)

CRAN Check Status

14 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

suggests

Dependency Network

Dependencies Reverse dependencies ape caper picante quantreg mvtnorm vegan ade4 FD (>= 1.0-12) Matrix animation (>= 2.4-0) phytools phyr pez

Version History

new 1.2-5 Mar 10, 2026
updated 1.2-5 ← 1.2-4 diff Aug 27, 2025
updated 1.2-4 ← 1.2-3 diff Aug 30, 2022
updated 1.2-3 ← 1.2-2 diff Jun 16, 2021
updated 1.2-2 ← 1.2-1 diff Oct 11, 2020
updated 1.2-1 ← 1.2-0 diff Jul 25, 2020
updated 1.2-0 ← 1.1-1 diff Feb 26, 2019
updated 1.1-1 ← 1.1-0 diff Jan 14, 2016
updated 1.1-0 ← 1.0-0 diff Aug 5, 2015
updated 1.0-0 ← 0.9-0 diff Feb 10, 2015
new 0.9-0 Nov 7, 2014