Description
Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | ERROR |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | ERROR |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (3 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Method.Rmd’ using rmarkdown pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory) HasCallStack backtrace: collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception Error: processing vignette 'Method.Rmd' failed with diagnostics: pandoc document conversion failed with error 1 --- failed re-building ‘Method.Rmd’ --- re-building ‘manual.Rmd’ using rmarkdown --- finished re-building ‘manual.Rmd’ SUMMARY: processing the following file failed: ‘Method.Rmd’ Error: Vignette re-building failed. Execution halted
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Method.Rmd’ using rmarkdown pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory) HasCallStack backtrace: collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception Error: processing vignette 'Method.Rmd' failed with diagnostics: pandoc document conversion failed with error 1 --- failed re-building ‘Method.Rmd’ --- re-building ‘manual.Rmd’ using rmarkdown --- finished re-building ‘manual.Rmd’ SUMMARY: processing the following file failed: ‘Method.Rmd’ Error: Vignette re-building failed. Execution halted
ERROR
r-release-linux-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Method.Rmd’ using rmarkdown pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory) HasCallStack backtrace: collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception Error: processing vignette 'Method.Rmd' failed with diagnostics: pandoc document conversion failed with error 1 --- failed re-building ‘Method.Rmd’ --- re-building ‘manual.Rmd’ using rmarkdown --- finished re-building ‘manual.Rmd’ SUMMARY: processing the following file failed: ‘Method.Rmd’ Error: Vignette re-building failed. Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 3, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Method.Rmd’ using rmarkdown pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory) HasCallStack backtrace: collectBacktraces, called at ...[truncated]... with error 1 --- failed re-building ‘Method.Rmd’ --- re-building ‘manual.Rmd’ using rmarkdown --- finished re-building ‘manual.Rmd’ SUMMARY: processing the following file failed: ‘Method.Rmd’ Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Dependency Network
Version History
new
2.1.5
Mar 10, 2026