multilevelcoda

1.3.3

Estimate Bayesian Multilevel Models for Compositional Data

0packages depend

4.4Kdownloads / year

22.1%test coverage

13/13checks pass

Overview

About

Maintained by Flora LeFirst published 2023-01-1311 releasesCRAN page ↗GitHub ↗

Implement Bayesian multilevel modelling for compositional data. Compute multilevel compositional data and perform log-ratio transforms at between and within-person levels, fit Bayesian multilevel models for compositional predictors and outcomes, and run post-hoc analyses such as isotemporal substitution models. References: Le, Stanford, Dumuid, and Wiley (2025) doi:10.1037/met0000750, Le, Dumuid, Stanford, and Wiley (2025) doi:10.1080/00273171.2025.2565598.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("multilevelcoda", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("florale/multilevelcoda")

Development version from florale/multilevelcoda. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-multilevelcoda

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-multilevelcoda

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-multilevelcoda

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.2 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.51

22.1%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 363 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 20%
Documented parameters: 100%
Return-value docs: 84%
References docs: 0%

Downloads

4.4K

CRAN downloads in the past year

Rank #13,908 · ~12/day · ~370/mo

Releases R versions

Daily download trend is not available in this view yet.

24930 days

78790 days

4.4K1 year

Compare downloads with other packages →

Also on161 r2u30 autocran

Repository

GitHub ↗ florale/multilevelcoda

23Stars

2Forks

0Open issues

0Open PRs

5Releases

703Commits

3Contributors

multilevel-modelsrcompositional-data-analysisr-packagebayesian-inferencemultilevelcoda

License GPL-3.0 · 703 commits · Last activity 2026-07-05 · 0% stars, 30d

Stars over time

2025-05-07 · 182026-07-07 · 23

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/florale/multilevelcoda on 2026-07-19.

Continuous integration (1)

GitHub Actions

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (21)

statsdata.table compositions brms extraoperators ggplot2 foreach future doFuture abindgraphicsshiny shinystan loo bayesplot emmeans plotly htmltools bslib DT fs

LinkingTo (0)

none

Suggests (7)

testthat covr withr knitr rmarkdown lme4 cmdstanr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Flora Le

Author, Maintainer

Authors (2)

Flora Le

Author, Maintainer

Joshua F. Wiley

Author

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.3.3Latest
2025-11-11 · current release · diff ↗
unarchivedReturned to CRAN
2025-11-11
archivedRemoved from CRAN
2025-09-09
requires archived package 'hrbrthemes'
1.3.2
2025-05-25 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.3.1
2024-11-23 · diff ↗
1.3.0.2
2024-07-09 · diff ↗
1.3.0.1
2024-06-30 · diff ↗
1.3.0
2024-06-11 · diff ↗
unarchivedReturned to CRAN
2024-06-11
R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2024-04-04
issues were not corrected in time
1.2.3
2024-03-11 · diff ↗
unarchivedReturned to CRAN
2024-03-10
archivedRemoved from CRAN
2024-02-29
issues were not corrected in time

Show 8 earlier events

1.2.1
2023-08-13 · diff ↗
1.2.0
2023-08-12 · diff ↗
1.1.0
2023-06-16 · diff ↗
unarchivedReturned to CRAN
2023-06-16
archivedRemoved from CRAN
2023-06-09
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
1.0.0
2023-01-13
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-01-13
Total releases: 11 / 3 yrs
License: GPL (>= 3) OSI
Additional repositories: mc-stan.org
Minimum R: ≥ 4.0.0
Bundled data: 542 KB / 4 files
Download size: 4.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Compositional Data Analysis

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