gkmSVM

Gapped-Kmer Support Vector Machine

v0.83.0 · Aug 20, 2023 · GPL (>= 2)

Description

Imports the 'gkmSVM' v2.0 functionalities into R <https://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.

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CRAN Check Status

4 NOTE

10 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	96.5s
r-devel-linux-x86_64-debian-gcc	NOTE	66.6s
r-devel-linux-x86_64-fedora-clang	OK	209.7s
r-devel-linux-x86_64-fedora-gcc	OK	163.4s
r-devel-macos-arm64	OK	18s
r-devel-windows-x86_64	OK	151s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	50s
r-oldrel-windows-x86_64	OK	170s
r-patched-linux-x86_64	OK	87.3s
r-release-linux-x86_64	OK	78.4s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	54s
r-release-windows-x86_64	OK	145s

Check details (4 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'

Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Mike Beer <mbeer@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahmoud",
                      family = "Ghandi",
                      role = "aut"),
               person(given = "Mike",
                      family = "Beer",
                      role = "cre",
                      email = "mbeer@jhu.edu"))
as necessary.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking:
  'BSgenome.Hsapiens.UCSC.hg18.masked',
  'BSgenome.Hsapiens.UCSC.hg19.masked'

Dependency Network

Version History

new 0.83.0 Mar 10, 2026

updated 0.83.0 ← 0.82.0 diff Aug 19, 2023

updated 0.82.0 ← 0.81.0 diff Jan 8, 2023

updated 0.81.0 ← 0.80.0 diff Aug 31, 2020

updated 0.80.0 ← 0.79.0 diff Feb 24, 2020

updated 0.79.0 ← 0.71.0 diff Jan 17, 2018

updated 0.71.0 ← 0.70 diff Jul 18, 2016

updated 0.70 ← 0.65 diff Jun 26, 2016

updated 0.65 ← 0.55 diff Dec 7, 2015

new 0.55 Jun 29, 2015