DiffBind
Bioc currentDifferential Binding Analysis of ChIP-Seq Peak Data
Release Lineage
Entered 2.9 · Nov 1, 2011
Current · Requires R 4.6
Description
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
437 20 exported
Complexity
9.9 avg / 120 max
Call network
437 nodes / 564 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
26,715
Files
132
Compiled share
9.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
114
Internal functions
260
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.04
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
99.1%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
3.4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
1
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
30
First release
2012-03-18
Latest release
2026-04-30
Avg cadence
183 days
Cold removal rate
100%
Dep drift
28
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 96%
- Documented parameters
- 96%
- Return-value docs
- 100%
- References docs
- 83%
Topics
Depended on by (3)
People
- Rory Stark author maintainer
- Gord Brown author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DiffBind")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.