R Observatory: Metrics for revert version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

revert

1.0.0Package record

Reversion Mutation Detector for DNA Sequencing Data

0packages depend

2.4Kdownloads / year

–test coverage

12/13flavors OK

Overview

About

Maintained by Hui XiaoCRAN page ↗

Reversion mutations are secondary mutations that reverse the deleterious effects of an original pathogenic mutation, partially or fully restoring the gene's function. The revert package detects reversion mutations for a specific pathogenic mutation from DNA-seq bam files.

Install

R (CRAN)Ubuntu (r2u)

install.packages("revert", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-revert

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Check messages

ERRORwhether package can be installedr-devel-windows-x86_64

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.

CRAN check page ↗

Slowest check: 8.4 min · r-oldrel-windows-x86_64

Status changes

ERROR12 OK, 1 ERRORNow
ERROR10 OK, 3 ERROR2026-10-20
OK13 OK2026-10-17
ERROR11 OK, 2 ERROR2026-09-04
OK13 OK2026-08-31
ERROR12 OK, 1 ERROR2026-08-27

Show 30 earlier changesHide 30 earlier changes

OK13 OK2026-08-25
ERROR12 OK, 1 ERROR2026-08-20
OK13 OK2026-08-12
ERROR12 OK, 1 ERROR2026-08-05
NOTE12 OK, 1 NOTE2026-08-04
ERROR11 OK, 2 ERROR2026-07-23
OK13 OK2026-07-21
ERROR11 OK, 2 ERROR2026-07-18
OK13 OK2026-07-15
ERROR11 OK, 2 ERROR2026-07-13
OK13 OK2026-07-07
ERROR12 OK, 1 ERROR2026-07-01
OK13 OK2026-06-30
ERROR12 OK, 1 ERROR2026-06-29
OK13 OK2026-06-27
ERROR12 OK, 1 ERROR2026-06-20
OK13 OK2026-06-19
ERROR12 OK, 1 ERROR2026-06-17
OK13 OK2026-06-15
ERROR12 OK, 1 ERROR2026-06-13
OK13 OK2026-06-12
ERROR12 OK, 1 ERROR2026-05-27
OK13 OK2026-05-22
ERROR11 OK, 2 ERROR2026-05-17
OK13 OK2026-05-15
ERROR12 OK, 1 ERROR2026-05-11
OK13 OK2026-05-10
ERROR12 OK, 1 ERROR2026-05-03
OK13 OK2026-04-30
ERROR12 OK, 1 NOTE, 1 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 0%1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

help

How these are measured

Downloads

2.4K

CRAN downloads in the past year

Rank #15,357 · ~7/day · ~202/mo

Releases R versions

Daily download trend is not available in this view yet.

26730 days

80190 days

2.4K1 year

Compare downloads with other packages →

Also on92 r2u

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing revert adds 0 packages. 10 more not on CRAN are not measured.

Depends (1)

R >= 4.4.0

Imports (12)

BSgenome BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ensembldb pwalignstatsutils

LinkingTo (0)

none

Suggests (7)

knitr rmarkdown futile.logger BSgenome.Hsapiens.UCSC.hg19 EnsDb.Hsapiens.v75 BSgenome.Hsapiens.UCSC.hg38 EnsDb.Hsapiens.v86

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Hui Xiao

Author, Maintainer since 0.0.1 (2023)

Syed Haider

Author

Stephen Pettitt

Author

Listed in earlier versions (2)

John Alexander

no longer listed · 0.0.1

Adam Mills

no longer listed · 0.0.1

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
record
2025-12-18 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.0.1
record
2023-11-23
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-23
Total releases: 2 / 3 yrs
License: GPL-2 OSI
Minimum R: ≥ 4.4.0
Download size: 2.6 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("revert")

Format

Xiao, H., Haider, S., & Pettitt, S. (2025). revert: Reversion Mutation Detector for DNA Sequencing Data (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.revert

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for revert version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →