chipseq
Bioc currentchipseq: A package for analyzing chipseq data
Release Lineage
Entered 2.3 · Oct 22, 2008
Current · Requires R 4.6
Description
Tools for helping process short read data for chipseq experiments.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
29 8 exported
Complexity
2.7 avg / 10 max
Call network
29 nodes / 12 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,992
Files
65
Compiled share
4.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
12
Internal functions
15
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
30.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
36
First release
2008-10-21
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
88.9%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 78%
- Return-value docs
- 78%
- References docs
- 20%
Topics
Depended on by (7)
Bioconductor (7)
People
- Bioconductor Package Maintainer maintainer
- Oluwabukola Bamigbade contributor
- Robert Gentleman author
- Michael Lawrence author
- Deepayan Sarkar author
- Zizhen Yao author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("chipseq")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.