crisprViz
Bioc currentVisualization Functions for CRISPR gRNAs
Release Lineage
Entered 3.16 · Nov 2, 2022
Current · Requires R 4.6
Description
Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
21 2 exported
Complexity
3.8 avg / 13 max
Call network
21 nodes / 28 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,388
Files
41
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
19
Testing
Has tests
Yes
Test-to-code ratio
0.14
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
14.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
8
First release
2022-11-01
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 14
- Examples that run
- 100%2 run in a plain check (2 of them under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- 76%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/crisprverse/crisprviz on 2026-10-22.
The repository owner accepts GitHub Sponsors
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| cage | – | – | – |
| cas12aGuideSet | – | – | – |
| cas9GuideSet | – | – | – |
| dnase | – | – | – |
| gpr21GeneModel | – | – | – |
| gpr21GuideSet | – | – | – |
| krasGeneModel | – | – | – |
| krasGuideSet | – | – | – |
| ltn1GeneModel | – | – | – |
| mmp7GeneModel | – | – | – |
| mmp7GuideSet | – | – | – |
| repeats | – | – | – |
Topics
Depended on by (2)
Bioconductor (2)
People
- Jean-Philippe Fortin author maintainer
- Luke Hoberecht author
Cite
Cite this package
Run in R for the authors' entry:
citation("crisprViz")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.