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DegCre

Bioc current

Probabilistic association of DEGs to CREs from differential data

v1.8.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.19 · May 1, 2024

Current · Requires R 4.6

1.0 In 5 of 49 releases 3.23

Description

DegCre generates associations between differentially expressed genes (DEGs) and cis-regulatory elements (CREs) based on non-parametric concordance between differential data. The user provides GRanges of DEG TSS and CRE regions with differential p-value and optionally log-fold changes and DegCre returns an annotated Hits object with associations and their calculated probabilities. Additionally, the package provides functionality for visualization and conversion to other formats.

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GeneRegulation
Software › Technology › Sequencing › ATACSeq
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › DNaseSeq
Software › Technology › Sequencing › RNASeq

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