diffHic
Bioc currentDifferential Analysis of Hi-C Data
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
162 41 exported
Complexity
5.1 avg / 18 max
Call network
162 nodes / 176 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,388
Files
149
Compiled share
25.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
43
Internal functions
44
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.17
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
97.7%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
2
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-08-18
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 97%
- References docs
- 32%
Topics
Depended on by (2)
Bioconductor (1)
CRAN (1)
People
Aaron Lun
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("diffHic")Cite the R Observatory
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From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.