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diffHic

Bioc current

Differential Analysis of Hi-C Data

v1.44.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.1 · Apr 17, 2015

Current · Requires R 4.6

1.0 In 23 of 49 releases 3.23

Description

Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.

Code

Code metrics have not been computed for this package yet.

Topics

Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › Preprocessing
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment
Software › WorkflowStep › Normalization
Software › StatisticalMethod › Clustering
Software › Technology › Sequencing › HiC

Depended on by (2)

Bioconductor (1)

OHCA

CRAN (1)

hicream

People

Aaron Lun