circRNAprofiler
Bioc currentcircRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
152 38 exported
Complexity
2.4 avg / 9 max
Call network
152 nodes / 180 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
20,130
Files
181
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
38
Internal functions
99
Testing & CI
Has tests
Yes
Test-to-code ratio
0.67
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 98%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
Simona Aufiero
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("circRNAprofiler")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.