circRNAprofiler
Bioc currentcircRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
152 38 exported
Complexity
2.4 avg / 9 max
Call network
152 nodes / 180 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
20,130
Files
177
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
38
Internal functions
99
Testing
Has tests
Yes
Test-to-code ratio
0.67
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 48 (7 internal)
- Examples that run
- 98%47 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- circRNAprofiler HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/aufiero/circrnaprofiler on 2026-10-22.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| ahChainFiles | data.frame | 1,113 × 2 | No other package |
| ahRepeatMasker | data.frame | 84 × 3 | No other package |
| attractSpecies | data.frame | 37 × 1 | No other package |
| backSplicedJunctions | data.frame | 63,521 × 16 | No other package |
| circRNAs_001 | data.frame | 11 × 18 | No other package |
| circRNAs_002 | data.frame | 10 × 6 | No other package |
| circRNAs_003 | data.frame | 9 × 6 | No other package |
| circRNAs_004 | data.frame | 7 × 6 | No other package |
| circRNAs_005 | data.frame | 11 × 6 | No other package |
| circRNAs_006 | data.frame | 10 × 6 | No other package |
| circRNAs_007 | data.frame | 10 × 6 | No other package |
| circRNAs_008 | data.frame | 8 × 6 | No other package |
| circRNAs_009 | data.frame | 9 × 6 | No other package |
| experiment | data.frame | 9 × 3 | No other package |
| gtf | data.frame | 4,401 × 9 | No other package |
| gwasTraits | data.frame | 653 × 1 | No other package |
| iupac | data.frame | 18 × 4 | No other package |
| memeDB | data.frame | 25 × 2 | No other package |
| mergedBSJunctions | data.frame | 41,558 × 16 | No other package |
| miRs | data.frame | 3 × 1 | No other package |
| miRspeciesCodes | data.frame | 271 × 2 | No other package |
| motifs | data.frame | 1 × 3 | No other package |
| traits | – | – | – |
| transcripts | data.frame | 1 × 1 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("circRNAprofiler")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.