crisprShiny
Bioc currentExploring curated CRISPR gRNAs via Shiny
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
55 3 exported
Complexity
3.3 avg / 32 max
Call network
55 nodes / 71 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,650
Files
79
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
52
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.45
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 10
- Examples that run
- 100%3 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/crisprverse/crisprshiny on 2026-10-21.
The repository owner accepts GitHub Sponsors
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| guideSetExample_basic | – | – | – |
| guideSetExample_kras | – | – | – |
| guideSetExample_kras_be | – | – | – |
| guideSetExample_ntcs | – | – | – |
| tooltipAnnotation | list | 70 elements | No other package |
| tss_kras | – | – | – |
| txdb_kras | – | – | – |
Topics
People
- Jean-Philippe Fortin author maintainer
- Luke Hoberecht author
Cite
Cite this package
Run in R for the authors' entry:
citation("crisprShiny")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1038/s41467-022-34320-7.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.