bumphunter
Bioc currentBump Hunter
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
Tools for finding bumps in genomic data
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
23 13 exported
Complexity
9.5 avg / 57 max
Call network
23 nodes / 12 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,719
Files
43
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
10
Testing & CI
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
11.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
27
First release
2013-07-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
11
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 83%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 8%
Topics
Depended on by (19)
People
- Tamilselvi Guharaj maintainer
- Shan Andrews contributor
- Martin Aryee author
- Hector Corrada Bravo author
- Leonardo Collado-Torres contributor
- Kasper Daniel Hansen author
- Rafael A. Irizarry author
- Andrew E. Jaffe contributor
- Harris Jaffee contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("bumphunter")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.