APAlyzer
Bioc currentA toolkit for APA analysis using RNA-seq data
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
60 12 exported
Complexity
2.3 avg / 10 max
Call network
60 nodes / 55 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,648
Files
46
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
47
Testing & CI
Has tests
Yes
Test-to-code ratio
0.06
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
LGPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
17
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Ruijia Wang maintainer author
- Wei-Chun Chen author
- Bin Tian author