R Observatory: Metrics for AnnotationFilter version 1.36.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AnnotationFilter

Bioc current

Facilities for Filtering Bioconductor Annotation Resources

v1.36.0 · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

27 4 exported

Complexity

2.8 avg / 16 max

Call network

27 nodes / 6 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

2,276

Files

39

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,111 (48.8%)Tests 306 (13.4%)Docs 434 (19.1%)Vignettes 425 (18.7%)

API

Exported functions

30

Internal functions

18

Recent export changes

v3.8+1 GeneNameFilter

v3.6+2 logicOp, not

Testing & CI

Has tests

Yes

Test-to-code ratio

0.28

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.4.0

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

19

First release

2017-04-24

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

–

Dep drift

0

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 39 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 95%
Return-value docs: 100%
References docs: 0%

Topics

Software › WorkflowStep › Annotation

Software › Infrastructure

Software

Depended on by (27)

CRAN (2)

RNAseqQC locuszoomr

People

Bioconductor Package Maintainer maintainer
Joachim Bargsten contributor
Martin Morgan author
Johannes Rainer author
Daniel Van Twisk contributor

At a glance

Version: 1.36.0
Category: software
License: Artistic-2.0
Requires R: ≥ 4.6
Maintainer: Bioconductor Package Maintainer
Entered: 3.5 · Apr 25, 2017
Current: 3.23 · Apr 29, 2026

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.4.0)

Imports

utilsmethodsGenomicRangesBioclazyeval

Suggests

BiocStyleBiocknitr testthat RSQLiteorg.Hs.eg.dbBiocrmarkdown

Source & history

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AnnotationFilter")

Format

Maintainer, B. P., Bargsten, J., Morgan, M., Rainer, J., & Van Twisk, D. (2026). AnnotationFilter: Facilities for Filtering Bioconductor Annotation Resources (Version 1.36.0) [Computer software]. https://bioconductor.org/packages/AnnotationFilter

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AnnotationFilter version 1.36.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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